Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7651g00003 ATGATCACCACCGCGCTCAGCCATTCACCTGGTTTCACAATTGCGGTTAATTCACCTGAGGATCCTCTCGTACCCTTTCTTTGGTCTATCAAGAAAGCCCTAGAAGCTTCGGGTGATTCCACTCCAAACCTCAGTAACTTACTCGGAGATTGCATCAGAAACTTCAAGAACAATGACCGGTATCGGAACGACGTCAGATTCCTCAAAATCTGGCTCATCTATATGGGAGTTAGTGATGATTTTGCCAGTGTTTTCAAAGAAATGGTGGACAGTAATGTATGTGCCAATAATTCTTCACTTTATGTTTGGTCTGCAAGTTTATTTGAGTTGAAGGGAAGATTGCGTGATGCTCTCTCCATCTATCAGCTTGGGATTGGCAGGAATGCGAAGCCAGTTGAGTGGTTGAGGAAGGCGCATTCCTTGTTTCTCAATAGAATGTCTGAAATACAGAATGCTGCTTCAAACCTGAAGGTTGATGATATAGAATCCATGAAACTGGAAAATTGTGGCATTAATCCTTGGGACACTTCCACCATGGATAGCCTGTTAAAGAAGATACATCCTTTACTTATGAAATTTGATGGGTACCGTTCAAGCGCTAAACCATACTCAGGAAAAGTGGCCTTATCTGCGTTGAAGAATTCATCAAGGAATAAAGTTATTGAGATAGGTGGAATGAAGTACCTTATAAAGGGATGTGCTGGACAGGGTGGTTTTGCCCAAGTATATAAGGCTAATGTCAACAGTGATCCTGACAATGTTGTTGCTCTAAAGATACAAAAACCAGCTTTCCCGTGGGAATTTTACATTTATCGTCAGCTTGATCGGCGCATCTTAGACAGAGAGAGGTCAAGTTATGGGTTCGCTCACGGAATTCATATCTATTCTGACTCTAGTATACTCATATGTGACTATTTAGCTAATGGGACACTACAGGATGTGGTGAACTCATATCTGGTCTTAGGAAAATCCATGGAAGAAGTGTTATGCATTTACTACACTATTGAAATGTTACACATGGTTGAAACTTTGCATGGTGTTGGCTTGATTCATGGTGATTTCAAGCCTGATAATCTGCTAATTCGATATGCTAGGAGTGACCTTACTGAAGATGGGTTCTTGAACCGAAGTGGTCCTTGGTGTGATGAGGGTGTTTGCCTTGTGGACTGGGGAAGAGGGATTGATCTGCAACTCTTTCCAGATCACACGGTATTTACGGGTGATTGCAGAACTTCTGGTTTTCGCTGCATTGAGATGCTAGAGAAGAAGCCGTGGAAATTTCAGGTAGATGCATATGGCCTTTGCGGTATTGTTCATGTGATGTTGCATGGTTCCTATATGGAAGTCGTCAAAAAAGAACAGTCTGATGGGGGCTACGTGTATCTTCCCAGACTACCCTTTAAACGTTACTGGAACATTGAGCTCTGGAAGAGTTTCTTCACTAAAATGCTAAACCAATACCCCCATGATGATGATCGTAGTTTTCTTCATGACTTGAAAAAGTCCTTCCAAGACTATATGGGCTCCAATCCCCAGCTTATAAAGAAACTAAAGGGGTTACTCTCAAGGCAAAGGGCTTCCATGTGTTCTGCTTAA 1596 0.4211 MITTALSHSPGFTIAVNSPEDPLVPFLWSIKKALEASGDSTPNLSNLLGDCIRNFKNNDRYRNDVRFLKIWLIYMGVSDDFASVFKEMVDSNVCANNSSLYVWSASLFELKGRLRDALSIYQLGIGRNAKPVEWLRKAHSLFLNRMSEIQNAASNLKVDDIESMKLENCGINPWDTSTMDSLLKKIHPLLMKFDGYRSSAKPYSGKVALSALKNSSRNKVIEIGGMKYLIKGCAGQGGFAQVYKANVNSDPDNVVALKIQKPAFPWEFYIYRQLDRRILDRERSSYGFAHGIHIYSDSSILICDYLANGTLQDVVNSYLVLGKSMEEVLCIYYTIEMLHMVETLHGVGLIHGDFKPDNLLIRYARSDLTEDGFLNRSGPWCDEGVCLVDWGRGIDLQLFPDHTVFTGDCRTSGFRCIEMLEKKPWKFQVDAYGLCGIVHVMLHGSYMEVVKKEQSDGGYVYLPRLPFKRYWNIELWKSFFTKMLNQYPHDDDRSFLHDLKKSFQDYMGSNPQLIKKLKGLLSRQRASMCSA 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7651g00003 531 SMART serkin_6 228 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7651g00003 531 SUPERFAMILY Protein kinase-like (PK-like) 227 489 IPR011009 -
Vium7651g00003 531 Pfam Protein kinase domain 234 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7651g00003 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 349 361 IPR008271 GO:0004672|GO:0006468
Vium7651g00003 531 Pfam Mad3/BUB1 homology region 1 18 125 IPR013212 -
Vium7651g00003 531 ProSiteProfiles Protein kinase domain profile. 228 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7651g00003 531 Gene3D Transferase(Phosphotransferase) domain 1 226 528 - -
Vium7651g00003 531 ProSiteProfiles BUB1 N-terminal domain profile. 10 168 IPR013212 -
Vium7651g00003 531 FunFam Mitotic checkpoint serine/threonine-protein kinase BUB1 226 528 - -
Vium7651g00003 531 Gene3D - 13 161 - -
Vium7651g00003 531 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 164 525 IPR015661 GO:0007094
Vium7651g00003 531 SMART mad3_bub1_i 5 125 IPR013212 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7651g00003 Vium-Chr7651 11730 17472 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7651g00003 222 361 MAP Kinase Kinase Kinase Kinase AT3G15220 29.078 1.89e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK BUB Vium7651g00003 Pkinase 2.2e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7651g00003 K02178 - gmx:100783171 939.102