Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7650g00002 ATGGGGGAATCACAGAACCACCATCTCCATCACCAAGCACCAACTCCGTCTAGATCGGCCATGAGAGCCGGCGGCGGCGGGGGCGAGATCGTGGAGGTTCAAGGCGGCCACATTGTCCGCTCCACCGGGCGGAAGGACCGTCACAGCAAGGTCTGCACTGCCAAAGGCCCCAGAGACCGCCGTGTGCGCCTGGCAGCTCACACGGCCATCCAATTCTACGATGTCCAGGACCGCCTCGGCTATGACCGCCCCAGCAAGGCGGTGGACTGGCTAATAAAAAAAGCCAAGACCGCCATCGACGAGCTCGCGGAGCTCCCTCCATGGAACCCCACGGCCACGTCAATGCAACCGCCGCAGCAGGAGGAAATCGCCCTCCGCGAGAACAAGTCTCTCGCTGTAGAACAAGACCCGACAGCGTTCGGCAACCGTGGCGAGAGCAACGTTGTCGTCGCCGCTACCAGAGTTCCGGACCAATTCTCTCACCAACAGTTGGAGAGTGAAAATGCTAACATTGGCACCAGCAAGTACAACAGTGGTCCTGGTTTTCTGCCACCGTCTTTGGATACTGATAACATTGCTGAGACAATCAAGACTTTCTTTCCCGTCGAAGCTACCACGACGTCGTTTCAGAGTTACCCTCCGGCGCCACCGGATTTGAGGCAGCAAGATCTGCGTTTGTCGTTGCAGTCCTTTCAGGACCCTATCATGCTTCAGCACCAGCCTCAGAGCCACAACGAGCCGGTGCTATTCGCCGGAACGGCGCTCGGCTTCGACGGCGGTTCCGCCTGGTCGGAGCACCAGAACCACCACTCGGAGGAGCACAGGTTGCTCTTTGGTGGCAACAGTGGCCACGGCGGTGGGTTTGTGTTCAACACTCCGGCGCCGGCGTTTGGCCAATTTTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACCCCTTCGGTTCGTGCTTGGATAGACCCTTCGGTCGATCACCACCATCACAACCATCACTACTTCTCGCCGCTGATCCACCAGGGCTCCGTCGCCGGAGGCTTCTCCAACGGCGGTGGATTCTCTGGCTTTCGCATTCCAGCACGAATTCAGGGTGAAGAGGAGCACGACGGCGTATCCGACAAGCCGTCCTCTGCTTCCTCCGATTCTCGTCATTGA 1152 0.5877 MGESQNHHLHHQAPTPSRSAMRAGGGGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDELAELPPWNPTATSMQPPQQEEIALRENKSLAVEQDPTAFGNRGESNVVVAATRVPDQFSHQQLESENANIGTSKYNSGPGFLPPSLDTDNIAETIKTFFPVEATTTSFQSYPPAPPDLRQQDLRLSLQSFQDPIMLQHQPQSHNEPVLFAGTALGFDGGSAWSEHQNHHSEEHRLLFGGNSGHGGGFVFNTPAPAFGQFFSQRGPLQSSNTPSVRAWIDPSVDHHHHNHHYFSPLIHQGSVAGGFSNGGGFSGFRIPARIQGEEEHDGVSDKPSSASSDSRH 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7650g00002 383 ProSiteProfiles TCP domain profile. 44 102 IPR017887 -
Vium7650g00002 383 Pfam TCP family transcription factor 43 157 IPR017887 -
Vium7650g00002 383 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 24 308 IPR005333 GO:0003700
Vium7650g00002 383 MobiDBLite consensus disorder prediction 1 30 - -
Vium7650g00002 383 MobiDBLite consensus disorder prediction 360 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7650g00002 Vium-Chr7650 29868 32616 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7650g00002 10 383 TCP Transcription Factor Family AT1G53230 50.000 1.52e-103 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium7650g00002 TCP 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7650g00002 - - ccaj:109787789 563.148