Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium764g00064 ATGGCGAATTCAGGAGCATCCCTTGTGCACGGTTTTGCTTCGATAGTGGAAAATGCTCTGAGAAGTATCGGAGGAGATTTGGGAGCATTTCCTTTGCAGGATTTTTCTTTGGCAGTGGAAAATGCTTTGAGTAGTATTGGAGGAGATTTCGGAGCATTACCTGTTCATGGATTTGCTTCTATAGTGAACAATGCGATGAGAAGTGTTGGAGGAGATTTGGGAGCAATGCCCGTGCATGGTTTTGCTTCGGCAGTGGAGAATGCGATGAGAAGTACAGGAGGAGATTTGGGAGCATTGCTCGTGCATGGTTTTGCTTCTGCAGTGGAGAATGCGATGAGAAGTACTGGAGGCGATTTTAGAGCCTTGCCCGAGCATGGTTTTGCTTCGACAGTGGAGAATGCCAATGGAGATTTGGGAATGTCTCATTCCCCCGTGCCTGATTATCAATTATTCAGCCTAGTTGAGCTTGCAGCAGCCACCGACAATTTCTCAGCGGGCAACAGGATTTGTGTTGGAAGCTATAGTGTTGTGTACATAGGCATACTCGTTGATGGTAGTAAGGTTGCAGTAGAAAGGGTAGAAACGGGGTTGAGTAGAACGCCTGAAGAGGCCTTCTGGTGGAGGAGAATGTCTAGTTCGACCTTTTTGCCCGGTTTACGCCCCAAGAACTTGGTTGGGCTGGTTGGGTTGTGTGCAGAGAAAGATGAAAGAGTGTTGGTGTACGAGTGCATGAAGAATGGATCGTTGAATGATCATTTACATGACAAGCGGATCAATGTGTTGAATTCGTGGGAAATAAGGATAAAAATTGCTTTGGATGCTTCCCGAGGAATAGAATATCTTCATAAGTATGGAATTTCATATACTGTTCATGGAGATATCAAGCCTTCCAACATTCTTCTTGATGCTACCTGGACGGCAAAGGTGTGTAACTTTGGGAAGGTAGCAGGAAGCATTGGATACATTGATCCTGAGTACTCAACTTTTGGTGCGTTGACAGAAAAGAGTGATGTGTATGGATTTGGAGTTGTGTTGCTTGAACTTCTAACAGGAAAGAGAGCTGCATATGGGCAAAGTAGGAAAAATAGAGGCACCATATTACATGTACCCTTTGCAGAGGCTGCTATTTTGGGTGGAGATTTTGTGAAAATTTTGGATACAAGGATTGGAGAACCCTATCTCGGTGAAGCAGAGGCTTTGGAGTTAGTGGCTCATACTGCCATGAATTGTGTAAATGTGGTAGGGAAGTTTAGACCAACCATTTCTCAAGTTGTGGTCAATTTGGAGAGGGCTTTAGCTTATTTCTTGTGCTAG 1314 0.4452 MANSGASLVHGFASIVENALRSIGGDLGAFPLQDFSLAVENALSSIGGDFGALPVHGFASIVNNAMRSVGGDLGAMPVHGFASAVENAMRSTGGDLGALLVHGFASAVENAMRSTGGDFRALPEHGFASTVENANGDLGMSHSPVPDYQLFSLVELAAATDNFSAGNRICVGSYSVVYIGILVDGSKVAVERVETGLSRTPEEAFWWRRMSSSTFLPGLRPKNLVGLVGLCAEKDERVLVYECMKNGSLNDHLHDKRINVLNSWEIRIKIALDASRGIEYLHKYGISYTVHGDIKPSNILLDATWTAKVCNFGKVAGSIGYIDPEYSTFGALTEKSDVYGFGVVLLELLTGKRAAYGQSRKNRGTILHVPFAEAAILGGDFVKILDTRIGEPYLGEAEALELVAHTAMNCVNVVGKFRPTISQVVVNLERALAYFLC 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium764g00064 437 ProSiteProfiles Protein kinase domain profile. 163 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium764g00064 437 Gene3D Transferase(Phosphotransferase) domain 1 244 434 - -
Vium764g00064 437 SMART serkin_6 163 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium764g00064 437 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 139 433 IPR044815 GO:0004674
Vium764g00064 437 SUPERFAMILY Protein kinase-like (PK-like) 139 428 IPR011009 -
Vium764g00064 437 Gene3D Phosphorylase Kinase; domain 1 131 242 - -
Vium764g00064 437 Pfam Protein kinase domain 167 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium764g00064 Vium-Chr764 478881 480297 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium764g00064 151 432 Receptor kinase-like Gene Family AT3G55950 49.841 4.42e-77 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vium764g00064 Pkinase 6.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium764g00064 - - pvu:PHAVU_001G243700g 583.178