Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium764g00048 ATGGCCAGCCCAGATACCCGACCATTCACTTGGCACTACACAGAAATCGATGACAGAGACCTAGAGATCCGAGGAAGGACTTTGTTCTTCGTCATCGTACTCTTCTCCATTATCCTTCTCGTCACGGTTCTCTTCATATACACGCGCTGGGTTTGTCGCTACCAGGGGCTCCTTCCCACCACAGCGTTTTCCGCCGCTACCCACGCGCCGTCACTCCCGCAGTCTCAGGGACTGGACCCCGCAACCCTCAAGAAATTGCCCATAATCCTTCACCACGCGCCCTCGGATCGCGACGAAAGTTCGTGGGACGAAACGGAGTGTTGCATCTGCCTCGGCGAGTTCAGAGACGGCGAGAAAGTGAAGGTTTTGCCGGCGTGCGACCATTATTTCCATTGTGAATGTGTTGATAGGTGGCTCACTCACCACTCAAGTTGCCCTCTCTGCAGAGCTTCTCTCAAGGTTGAATCTTCTTTCCCAAAGATTTTGATTCAGGAACCACCTCTCAGAATTGATTTTCAGTTCTAG 525 0.5238 MASPDTRPFTWHYTEIDDRDLEIRGRTLFFVIVLFSIILLVTVLFIYTRWVCRYQGLLPTTAFSAATHAPSLPQSQGLDPATLKKLPIILHHAPSDRDESSWDETECCICLGEFRDGEKVKVLPACDHYFHCECVDRWLTHHSSCPLCRASLKVESSFPKILIQEPPLRIDFQF 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium764g00048 174 CDD RING-H2_EL5-like 106 149 - -
Vium764g00048 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 155 IPR013083 -
Vium764g00048 174 Pfam Ring finger domain 106 149 IPR001841 -
Vium764g00048 174 SUPERFAMILY RING/U-box 98 155 - -
Vium764g00048 174 FunFam RING-H2 finger protein ATL66 70 154 - -
Vium764g00048 174 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Vium764g00048 174 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 28 156 - -
Vium764g00048 174 SMART ring_2 107 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium764g00048 Vium-Chr764 345372 346552 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium764g00048 11 157 C3H Transcription Factor Family AT3G11110 44.000 1.00e-37 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium764g00048 - - gmx:100803278 338.576