Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium764g00046 ATGAAGGGTTATGAGCCCCGTTCAAGCTCTTCATGTGCAGCTTGCAAGTTATTGAAGAGAAGATGCGTACCCAATTGTATTTTTGCACCTTACTTTAGGTCTGATGAGTGCAAGAAGTTTGCCAAGGTGCACAAGGTTTTTGGAGCCAGCAATGTCAGCAAGATCTTGATCGAAGTGTCGGAAGAGCAGAGAGAGGACACCGTCAATTCTCTCGCGTATGAGGCCGAGGCAAGGCTCAGAGACCCCGTTTATGGATGCATTGGTGCCATAGCTCTGTTGCAGAGGAAGATGGTCGAGCTTCAACATGATCTCGCCATTGCTAAGGACCGTCTTGCACGATGTCACGCTGCTGCTACTGTTCTCCCTTCTCCTGATATCTTGCATGCCCATGTTAGCCTCCCTCCATTCCCTGACTTTTGCACTTCCTCCAATGATTTCAATGATATCTTCTGCCACAGTTCGTCATCTCAATTATTCAGCCGCCACGAAACGGTCGATGATTTCAACCAAATCCCATATATATTTTAA 528 0.4697 MKGYEPRSSSSCAACKLLKRRCVPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVSEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARCHAAATVLPSPDILHAHVSLPPFPDFCTSSNDFNDIFCHSSSSQLFSRHETVDDFNQIPYIF 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium764g00046 175 Coils Coil 90 110 - -
Vium764g00046 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 130 - -
Vium764g00046 175 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Vium764g00046 175 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium764g00046 Vium-Chr764 331315 332226 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium764g00046 1 111 AS2 family AT3G11090 80.180 5.67e-63 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium764g00046 LOB 1.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium764g00046 - - gmx:100791250 341.658