Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium764g00039 ATGAACAAAAACTGGAAATCCAGCTGCTTCAGGGATCCTTTGTTCCTTCTAGCGTTGTGTTTGTTCTTTCAGAACTTTAGTTCCTGTTGCTCTTTGAATGAAGAAGGTAAAGCTCTTCTGAAGTTCAAGCAGGGAATAGTAAGAGACCCTTTTGGTGCTTTGTCAAATTGGGTTAACGATGAAGTAGCAGTTAACCATTGTAATTGGTTTGGAGTTGAGTGCTCTGCTGGAAGAGTGGTAGTCTTGAATTTGAAAGACCTTTGTCTTGAAGGAAATCTGGTACCTGAGCTCGCGAACCTTGTTCACATAAAGTCCATAATTTTGCGGAACAATTCTTTTTATGGAATCATCCCTGAAGGAATTGCACACTTGGATGAATTGGAGGTTTTGGATTTGGGCTACAACAACTTCAGTGGACATCTACCTACAGATCTTGGGAATAATATTTCGCTAACAATCCTTTTGTTGGACAACAATGAACATCTCTGTGGTTTCTCTCCTGAAATTAATAAATTGATGTTGATTTCTGAATATCAAGTAGACGAAAGACAACTGAGTCTGGCAGCAAAAGTGCCAGCTTGTACAAGAAGATTCATCAAACGGCACATTGGCAAAAATAAGAAAGGTTTAAGGAGGCTACTGCAATCTTCTCGTGATAGCAATTCTTTTAACCGTGCTGCTAGGTTTCCTGATAGTCCTCCTCCATCTTCTTCAGCTCCCTCACCGGCCCCAGCAACACCGCCACCGGTTGAGGAACCAACTTTCACTGACCGAAATGATTCTGCTTCTCCTTCTCCTTCTCTGCCTGAACCGCGCTCTGGCTCATCAGATAGCAGTGGATCATCAGATAGCAATGTTGTTGCTATTTTGGCTGGAGTTATAGGTGGTGTTGTATTTCTTGTCATTTCAATCATTGGCATATATCTCTGCAAAACAAACAAGGTAGCTACTGTAAAACCTTGGGCGACAGGATTAAGTGGACAGCTTCAGAAGGCATTCATAACAGGTGTGCCAAAGCTGAAGAGATCAGAGCTTGAAGCAGCATGTGAAGATTTTAGTAATGTAATTGGCACTTCTTCCATTGGTACAGTGTACAAAGGGACTTTGTCCACTGGTGTTGAAATAGCCGTGGCCTCTGTTGCAGCGACATCATCAAAAGATTGGTCAAAGACTTTAGAAGCCCAATTTAGGAAGAAGATAGATACATTATCAAAAGTGAACCACAAGAATTTTGTAAATCTTCTTGGACATTGTGAAGAAGACGAGCCTTTCACCAGAATGGTGGTTTTTGAGTATGCCCCAAATGGAACACTCTTTGAGCATTTGCACATAAAAGAAGCTGAGCACTTGGATTGGGAAACAAGACTCAGAGTTGCCATGGGTATGGCTTACTGCCTACAACATGTGCACCAGTTGGAGCCTCCTTTGGTTATTGGCAACCTGAATTCTTCAGCGGTTCAACTCACGGATGATTGTGCTGCCAAAATCTCTGATTTGAGTTTCTTAACTGAAATAGCTTCAGCTGTGATGAAATCTTCTGCTAGACAACACCCTGACATGACCCCAGCAAGTAACATTTACAGTTTTGGTGTTATATTATTTGAAATGGTGTCAGGCAGGCTCCCTTATTCAGTGGACAATGATGGCTCACTTGATGACTGGGCTTCACAATATTTACATGGGGATCAGCCCCTCAAAGAAATGGTGGATCCATCTCTGGCGTCCTTCCAACAAGAACAGCTGGAACAAGTTGATGCTTTGATCAAATCTTGTGTCCACCCTGATCCAAAGCAAAGACCAACTATGAAAGAAATTTGTGTGAGATTAAGAGAGATAACAAAAATAACACCCGAGGCAGCTGTTCCAAAACTTTCTCCACTTTGGTGGGCGGAGCTTGAGATTGCCTCGGTAAATGGAAACTGA 1923 0.4223 MNKNWKSSCFRDPLFLLALCLFFQNFSSCCSLNEEGKALLKFKQGIVRDPFGALSNWVNDEVAVNHCNWFGVECSAGRVVVLNLKDLCLEGNLVPELANLVHIKSIILRNNSFYGIIPEGIAHLDELEVLDLGYNNFSGHLPTDLGNNISLTILLLDNNEHLCGFSPEINKLMLISEYQVDERQLSLAAKVPACTRRFIKRHIGKNKKGLRRLLQSSRDSNSFNRAARFPDSPPPSSSAPSPAPATPPPVEEPTFTDRNDSASPSPSLPEPRSGSSDSSGSSDSNVVAILAGVIGGVVFLVISIIGIYLCKTNKVATVKPWATGLSGQLQKAFITGVPKLKRSELEAACEDFSNVIGTSSIGTVYKGTLSTGVEIAVASVAATSSKDWSKTLEAQFRKKIDTLSKVNHKNFVNLLGHCEEDEPFTRMVVFEYAPNGTLFEHLHIKEAEHLDWETRLRVAMGMAYCLQHVHQLEPPLVIGNLNSSAVQLTDDCAAKISDLSFLTEIASAVMKSSARQHPDMTPASNIYSFGVILFEMVSGRLPYSVDNDGSLDDWASQYLHGDQPLKEMVDPSLASFQQEQLEQVDALIKSCVHPDPKQRPTMKEICVRLREITKITPEAAVPKLSPLWWAELEIASVNGN 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium764g00039 640 MobiDBLite consensus disorder prediction 233 251 - -
Vium764g00039 640 Gene3D Phosphorylase Kinase; domain 1 322 432 - -
Vium764g00039 640 Pfam Protein tyrosine and serine/threonine kinase 352 608 IPR001245 GO:0004672|GO:0006468
Vium764g00039 640 MobiDBLite consensus disorder prediction 256 281 - -
Vium764g00039 640 FunFam Inactive receptor-like serine/threonine-protein kinase 324 432 - -
Vium764g00039 640 MobiDBLite consensus disorder prediction 222 281 - -
Vium764g00039 640 Gene3D Ribonuclease Inhibitor 30 221 IPR032675 -
Vium764g00039 640 ProSiteProfiles Protein kinase domain profile. 350 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium764g00039 640 Pfam Leucine rich repeat N-terminal domain 33 75 IPR013210 -
Vium764g00039 640 FunFam Nuclear pore complex protein NUP107 32 192 - -
Vium764g00039 640 Gene3D Transferase(Phosphotransferase) domain 1 433 621 - -
Vium764g00039 640 SUPERFAMILY L domain-like 32 166 - -
Vium764g00039 640 PANTHER PROTEIN MALE DISCOVERER 2 12 637 - -
Vium764g00039 640 SUPERFAMILY Protein kinase-like (PK-like) 333 609 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium764g00039 Vium-Chr764 281368 285661 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium764g00039 9 611 Receptor kinase-like Gene Family AT5G16000 25.357 7.12e-46 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vium764g00039 PK_Tyr_Ser-Thr 1.2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium764g00039 - - gmx:100784541 1021.92