Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium764g00033 ATGCTTTTAAGCTTTTACTCCCAAACCAAACAAGAAATTTTGCAGCTACCCTTTTTCTCCCGTAATCAAATGGCTGGGAATTCTCCATGTGCTTCATGCAAGCTTCTCAGACGCAGGTGTACCAAGGACTGCATCTTTGCTCCTTATTTCCCTTCCAATGACCCTCAAAAGTTCGCCTTAGTTCACAAGGTTTTTGGCGCTAGCAATGTTAGCAAAATGCTGCAGGAACTTCCTATTGAGCAGAGAGCAGATGCTGTGAGTAGTTTGGTGTACGAAGCACATGCAAGAGTTCGGGACCCTGTGTATGGCTGTGTTGGGGCCATATCCTATTTACAAAACCAGGTTTCTGAGCTTCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATACTCTGCATCCAGATGCAACAGGAGCCAGTGATGCCAAATCCAGAAATGGAAAACCCAGATCAGAAATCTTACCTTCTCCAGAATGAACTCCCTCAGTTTCTCAACTATGCCTCTTCTAGCAATGTAATTTATGATGCTGTCTCAAGAGACAACATTTATGGACATGATATGGTTTCCTGA 567 0.4409 MLLSFYSQTKQEILQLPFFSRNQMAGNSPCASCKLLRRRCTKDCIFAPYFPSNDPQKFALVHKVFGASNVSKMLQELPIEQRADAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQQEPVMPNPEMENPDQKSYLLQNELPQFLNYASSSNVIYDAVSRDNIYGHDMVS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium764g00033 188 Coils Coil 108 128 - -
Vium764g00033 188 Pfam Lateral organ boundaries (LOB) domain 29 126 IPR004883 -
Vium764g00033 188 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 26 146 - -
Vium764g00033 188 ProSiteProfiles LOB domain profile. 28 129 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium764g00033 Vium-Chr764 239480 240509 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium764g00033 26 140 AS2 family AT2G30130 86.957 2.09e-72 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium764g00033 LOB 3.2e-42 No_clan