Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium764g00032 ATGCTTTTAAGCTTTTACTCCCAAACCAAACAAGAAATTTTGCAGCTACCCTTTTTCTCCCGTAATCAAATGGCTGGGAATTCTCCATGTGCTTCATGCAAGCTTCTCAGACGCAGGTGTACCAAGGACTGCATCTTTGCTCCTTATTTCCCTTCCAATGACCCTCAAAAGTTCGCCTTAGTTCACAAGGTTTTTGGCGCTAGCAATGTTAGCAAAATGCTGCAGAGAGCAGATGCTGTGAGTAGTTTGGTGTACGAAGCACATGCAAGAGTTCGGGACCCTGTGTATGGCTGTGTTGGGGCCATATCCTATTTACAAAACCAGGTTTCTGAGCTTCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATACTCTGCATCCAGATGCAACAGGAGCCAGTGATGCCAAATCCAGAAATGGAAAACCCAGATCAGAAATCTTACCTTCTCCAGAATGAACTCCCTCAGTTTCTCAACTATGCCTCTTCTAGCAATGTAATTTATGATGCTGTCTCAAGAGACAACATTTATGGACATGATATGGTTTCCTGA 549 0.4408 MLLSFYSQTKQEILQLPFFSRNQMAGNSPCASCKLLRRRCTKDCIFAPYFPSNDPQKFALVHKVFGASNVSKMLQRADAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQQEPVMPNPEMENPDQKSYLLQNELPQFLNYASSSNVIYDAVSRDNIYGHDMVS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium764g00032 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 26 140 - -
Vium764g00032 182 Coils Coil 102 122 - -
Vium764g00032 182 ProSiteProfiles LOB domain profile. 28 123 IPR004883 -
Vium764g00032 182 Pfam Lateral organ boundaries (LOB) domain 29 120 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium764g00032 Vium-Chr764 239474 240516 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium764g00032 26 134 AS2 family AT2G30130 83.478 2.99e-66 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium764g00032 LOB 6.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium764g00032 - - gmx:121173085 288.885