Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium764g00024 ATGGTAGCCGAGAAAACCAACATTACTACCTCTTGTCAGTTTTCTCAACATGAAGTAGGAAATGCAGACCATGTTTCTGACAAGAAGAAAGAAAGATGGAAGAAGACTCCGTCCAAGGCGCACAACAGCCCGTGTTCTTTTTTGTTTCTCTTCTGGGTCTGGACTCTTGTTCTCTCCACCTGTTTGAAATCGGTTTTGTGCGAAGATGAGGGTTGGGATGGCGTGGTTGTGACGGCATCAAACTTCTTAGCACTTCAAGCGTTCAAGCAAGAGTTGGTTGATCCCGAAGGCTTCCTGAGAAGCTGGAATGACAGTGGCTATGGAGCTTGTTCCGGAGGTTGGGTTGGTATCAAATGTGCTAAGGGAGAGGTTATTGTAATCCAGCTTCCGTGGAAGGGACTGAGAGGGCGTATCACTGATAAAATTGGGCAGCTTCAAGGTCTTCGAAAGCTCAGTCTTCATGATAATCAAATTGGTGGTTCAATCCCTTCCACTTTTGGACTTCTTCCTAACCTTAGAGGGGTTCAGTTATTCAACAATAGGCTTACAGGTTCAATCCCTTCTTCTTTAGGTTACTGCCCTTTGCTTCAGTCTCTTGACCTCGGCAACAACTTGCTCACAGGAGCAATCCCTTATAGTCTTGCCAATTCCACCAAACTTTATTGGCTCAACTTGAGTTTTAACTCCTTCTCTGGTCCTTTACCAGCTAGCTTAACTCACTCACTTTCCCTCGCATTCCTTTCTCTTCAACATAATAATCTATCTGGTCCCCTTCCTAACTCTTGGGGTGGGAGTTCTAAGAATGACGAGTTCTTTAGGCTTCGAAATTTGCTCCTAGATCATAACTTTTTCACTGGAAACGTTCCTTCTTCTTTGGGTGGCTTAAGAGAACTCAATGAAATTTCCCTTAGTAATAATAGGTTTAGTGGAGCTATACCGAATGAAATAGGATCTCTTTCTAGACTCAAGACACTAGACATTTCTAATAATGCCTTGAATGGGAGCTTGCCTGCTACCCTCTCTAATTTATCCTCGCTTACACTGCTGAATGTTGAGAACAACCTCCTAGAAAATCAAATCCCTGGAACTTTAGGAAGTTTGCACAATCTTTCTGTTCTAATTTTGAGTAGAAACCAATTTAGTGGGCATATTCCTTCTAGTATTGCAAACATTTCCACTCTTAAGCAGCTTGATTTGTCACTGAATAATCTCAGTGGAGAAATTCCAGTCTCCTTTAACAGTCAACGTAGTCTTGATCTCTTCAATGTTTCTTATAATAGCCTCTCAGGTTCTGTTCCCCCTCAACTTGCCAGGAAGTTCAACTCAAGCTCATTTGTGGGAAATATTCAACTATGTGGATACAGCCCCTCAACACCATGTCCTTCACAAGCTCCATCAGAAGGAGTCATTGCACCACCTCATGAAATGTCAAAACACCACCAGCATAGGAAGCTAAGTACCAAAGACATTATTCTCATAGTAGCAGGAGTTCTTCTCATAGTCCTGATCATGCTTTGTTGTATCCTTCTGTTCTGTTTGATCAGAAAGAGATCAACATCAAAGACGGAGAATGGCAGAGGTGTAGGGAGAACTGGAGCTACGAGGGCAGAAAAAGGAATCCCTCCTGTTGCTGCTGGTGATGTTGAAGCAGGTGGGGAGGCTGGAGGGAAACTAGTGCATTTTGATGGACCAATAGCTTTTACAGCTGATGATCTCTTGTGTGCAACAGCTGAGATAATGGGAAAGAGCACCTATGGAACTGTATATAAGGCTATATTGGAGGATGGGAGTCAAGTTGCAGTGAAGAGATTGAGGGAAAAGATCGCTAAAGGTCAGAGAGAATTTAAATCAGAAGTCAGTGTTCTGGGAAAAATTAGACACCCCAATGTTTTGGCTCTGAGGGCCTATTACTTGGGACCCAAAGGGGAGAAGCTTCTGGTTTTTGATTACATGCCCAGAGGAAGTGTTGCTTCTTTCCTACACGGTAGTGGAACTGAAACATCCATTGATTGGCAAACAAGGATGAAAATAGCACAGGACATGGCTCGTGGCTTGTTGTACCTCCATTCCCAGGAGAATATTATACACGGAAACCTCACATCCAGTAATGTACTGCTAGATGAGAATACAAATGCTAAAATTGCAGATTTTGGTCTTTCTAGGCTGATGACAACTGCTGCTAATTCCAACGTGATAGCTACTGCTGGAGCATTGGGATACCGCGCGCCCGAGCTCTCCAAGCTCAAGAAAGCCAACTCCAAAACTGATATCTATAGCCTTGGTGTTATCTTGTTAGAACTCCTAACGAGGAAGTCACCTGGGGTGTCTATGAATGGATTAGATTTACCTCAGTGGGTTGCCTCCATTGTCAAAGAGGAGTGGACAAATGAGGTTTTTGAAGCGGACTTAATGAGAGACTCTTCAACAGTTGGCGATGAGTTGCTAAACACATTGAAGCTCGCTTTGCACTGTGTTGATCCTTCTCCATCAGCACGACCAGAAGTTCATCAAGTGCTACAGCAGCTGGAAGAGATTAGACCAGAGAGATCAGTCACAGCCAGTCCTGGGGATGATTCTATAATATAG 2586 0.4354 MVAEKTNITTSCQFSQHEVGNADHVSDKKKERWKKTPSKAHNSPCSFLFLFWVWTLVLSTCLKSVLCEDEGWDGVVVTASNFLALQAFKQELVDPEGFLRSWNDSGYGACSGGWVGIKCAKGEVIVIQLPWKGLRGRITDKIGQLQGLRKLSLHDNQIGGSIPSTFGLLPNLRGVQLFNNRLTGSIPSSLGYCPLLQSLDLGNNLLTGAIPYSLANSTKLYWLNLSFNSFSGPLPASLTHSLSLAFLSLQHNNLSGPLPNSWGGSSKNDEFFRLRNLLLDHNFFTGNVPSSLGGLRELNEISLSNNRFSGAIPNEIGSLSRLKTLDISNNALNGSLPATLSNLSSLTLLNVENNLLENQIPGTLGSLHNLSVLILSRNQFSGHIPSSIANISTLKQLDLSLNNLSGEIPVSFNSQRSLDLFNVSYNSLSGSVPPQLARKFNSSSFVGNIQLCGYSPSTPCPSQAPSEGVIAPPHEMSKHHQHRKLSTKDIILIVAGVLLIVLIMLCCILLFCLIRKRSTSKTENGRGVGRTGATRAEKGIPPVAAGDVEAGGEAGGKLVHFDGPIAFTADDLLCATAEIMGKSTYGTVYKAILEDGSQVAVKRLREKIAKGQREFKSEVSVLGKIRHPNVLALRAYYLGPKGEKLLVFDYMPRGSVASFLHGSGTETSIDWQTRMKIAQDMARGLLYLHSQENIIHGNLTSSNVLLDENTNAKIADFGLSRLMTTAANSNVIATAGALGYRAPELSKLKKANSKTDIYSLGVILLELLTRKSPGVSMNGLDLPQWVASIVKEEWTNEVFEADLMRDSSTVGDELLNTLKLALHCVDPSPSARPEVHQVLQQLEEIRPERSVTASPGDDSII 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium764g00024 861 FunFam Leucine-rich repeat receptor-like protein kinase 559 650 - -
Vium764g00024 861 FunFam Pollen receptor-like kinase 1 651 855 - -
Vium764g00024 861 Gene3D Transferase(Phosphotransferase) domain 1 652 858 - -
Vium764g00024 861 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 267 845 - -
Vium764g00024 861 Pfam Leucine rich repeat 147 206 IPR001611 GO:0005515
Vium764g00024 861 Pfam Leucine rich repeat 273 332 IPR001611 GO:0005515
Vium764g00024 861 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 78 261 - -
Vium764g00024 861 Gene3D Phosphorylase Kinase; domain 1 580 651 - -
Vium764g00024 861 Gene3D Ribonuclease Inhibitor 239 335 IPR032675 -
Vium764g00024 861 Gene3D Ribonuclease Inhibitor 80 238 IPR032675 -
Vium764g00024 861 SUPERFAMILY L domain-like 119 456 - -
Vium764g00024 861 SUPERFAMILY Protein kinase-like (PK-like) 578 847 IPR011009 -
Vium764g00024 861 Gene3D Ribonuclease Inhibitor 336 462 IPR032675 -
Vium764g00024 861 ProSiteProfiles Protein kinase domain profile. 574 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium764g00024 861 Pfam Leucine rich repeat N-terminal domain 83 119 IPR013210 -
Vium764g00024 861 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 265 464 - -
Vium764g00024 861 SMART LRR_typ_2 367 390 IPR003591 -
Vium764g00024 861 SMART LRR_typ_2 343 366 IPR003591 -
Vium764g00024 861 SMART LRR_typ_2 319 342 IPR003591 -
Vium764g00024 861 SMART LRR_typ_2 295 318 IPR003591 -
Vium764g00024 861 SMART LRR_typ_2 145 168 IPR003591 -
Vium764g00024 861 SMART LRR_typ_2 169 193 IPR003591 -
Vium764g00024 861 Pfam Protein tyrosine and serine/threonine kinase 577 842 IPR001245 GO:0004672|GO:0006468
Vium764g00024 861 CDD STKc_IRAK 580 845 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium764g00024 Vium-Chr764 157742 161109 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium764g00024 72 847 Receptor kinase-like Gene Family AT3G51740 63.030 0.0 933
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium764g00024 PK_Tyr_Ser-Thr 1.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium764g00024 - - pvu:PHAVU_001G246800g 1514.59