Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium764g00001 ATGGGGAAAAGAGGGAATGTGTTGATGCAGAAGTATGAATTTGGGAAACTATTAGGGCAAGGAAACTTTGCAAAGGTTTACCATGCAAGGGACCTCAAGACCGGGGAGAGTGTTGCCGTTAAGGTGATTGAAAAGGAGAAAATTTTAAAAATTGGGTTGGTTGATCAAACAAAGCGAGAGATATCTATCATGAGACGGATTAAACACCCCAATGTTTTGCAACTGTTTGAGGTCTTGGCCACCAAGACCAAGATTTACTTCATCATGGAATATGCCAAAGGGGGCGAACTTTTTAACAAGGTGGCTAAAGGTAGATTAAGTGAGGCTAGGGCAAGGAAGTACTTTCAACAATTGGTCAGTGCAGTTGATTTTTGCCATAGCAAGGGAGTTTATCACAGGGATTTGAAGCCAGAGAACTTGCTTTTGGATGAGAATGGTATTTTGAAGGTAGCAGATTTTGGGTTGAGTGCATTTGTTGAATCGCATCGTCAAGACGACATGTTGCATACAGTTTGTGGAACTCCTGCATATGTGGCGCCTGAGGTTATAAGTAGAAAGGGCTATAATGGAGCAAAATCTGATGTATGGTCTTGTGGAGTGATCTTATTTGTTCTTTTGGCTGGTCATTTGCCATTCTATGATTTAAATCTCATGTCACTGTATAGGAAAATAAGCAGGGCGGAATACAAATGTCCAAACTGGTTTTCAATTGAAGTGCGCAGATTGTTAGGGAAAATCCTTGACCCAAATCCAGATACCAGGATATCCATGGCAAAAGTTATGGAAAATTCGTGGTTCAGAAAAGGATTCAAACCCAATTCCGGTGAAGTGAAAAGAGAGTCTGCAAATGTGGATTTAGTTAATTCTGATCAAGTTTTTGGTTTGTGCGAGAATACAATCACTGCTTCTGTTGAGGCAGTTCAAGAATTGGTTGCGCCTGGACATTTAAATGCTTTTGACATAATTTCTCTGTCTGCAGGGCTAGACTTGTCTGGCCTATTTGCTAACATTGGTGAACAGGAAAATGTCAAATTTACATTCATGAGCTCTGCCTCATCTATCATGGCTACAGTGGAAGATATTGCTCGCATTTTGAGGATGGTGATCATTAAGAAGGATGGAGGGCTGCTGAAATTGGAGAGATCCAAGGAAGGTAGAAAAGAACCGCTTTCCATTGATGTTGAAATATTTGAAGTTGCTCCATCTTTCCATTTGGTTGAGATGAAATCCGGCGATGATGCATTAGAATTCCAGAAGATAGTCAAGGAAGATTTAAGACCAACTCTCAAAGATATTGTTTTTGTTTGGCAAGATGAGCATTACTTGCAGCAACAGGATTGTACTCCTTAA 1350 0.4037 MGKRGNVLMQKYEFGKLLGQGNFAKVYHARDLKTGESVAVKVIEKEKILKIGLVDQTKREISIMRRIKHPNVLQLFEVLATKTKIYFIMEYAKGGELFNKVAKGRLSEARARKYFQQLVSAVDFCHSKGVYHRDLKPENLLLDENGILKVADFGLSAFVESHRQDDMLHTVCGTPAYVAPEVISRKGYNGAKSDVWSCGVILFVLLAGHLPFYDLNLMSLYRKISRAEYKCPNWFSIEVRRLLGKILDPNPDTRISMAKVMENSWFRKGFKPNSGEVKRESANVDLVNSDQVFGLCENTITASVEAVQELVAPGHLNAFDIISLSAGLDLSGLFANIGEQENVKFTFMSSASSIMATVEDIARILRMVIIKKDGGLLKLERSKEGRKEPLSIDVEIFEVAPSFHLVEMKSGDDALEFQKIVKEDLRPTLKDIVFVWQDEHYLQQQDCTP 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium764g00001 449 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Vium764g00001 449 Pfam NAF domain 313 369 IPR004041 GO:0007165
Vium764g00001 449 SUPERFAMILY Protein kinase-like (PK-like) 8 278 IPR011009 -
Vium764g00001 449 Gene3D Kinase associated domain 1, KA1 318 435 - -
Vium764g00001 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Vium764g00001 449 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165
Vium764g00001 449 FunFam Non-specific serine/threonine protein kinase 311 435 - -
Vium764g00001 449 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium764g00001 449 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Vium764g00001 449 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium764g00001 449 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium764g00001 449 CDD CIPK_C 317 430 - -
Vium764g00001 449 FunFam Non-specific serine/threonine protein kinase 2 291 - -
Vium764g00001 449 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 430 - -
Vium764g00001 449 Gene3D Transferase(Phosphotransferase) domain 1 4 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium764g00001 Vium-Chr764 979 3086 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium764g00001 1 439 CBL-interacting serine-threonine protein kinases AT5G58380 56.984 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium764g00001 Pkinase 1.4e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium764g00001 K07198 - gmx:100801834 729.939