Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7649g00004 ATGTATCATTCTCCGCAGGAGTTGAACGGAGTTCATAACAGTGTGGCCAACGTTGGAGGCTCAGAAAACAACAGCTTCAACTTCCAACATCATGAGCAACATCTGTTTGATGTCCCCGTTTCATGTTTGAACTTCGATTCGCAAAATTTTCTGTGCCAGTCTTCTGGAGACCACTCGCCTCCACTGTTCGGAAGTGTTGTTGATTCCTTCTTATTCAGCCATGAAGACACGTTCTGTGAAACGTATAATGTTTACGAGCATTTCAGAAACGAGAAAAAGAACATCTTGGAGGGTGGTGCTTCTGCCCCGGTTAATGGGGTTGAGGTTGTTTCTGCCACTTCTGGAAACTCAGCTTCTAGCATGGTTCCAACGAGGAAAAAAGGAATAAAATGGACCAAAGATTTGCATCAACAGTTCGTAGCAGCTGTTAACAATCTTGGTGGTGCTCAAAAAGCAACGCCCAAGGCAGTGCTAAAGATGATGAATTCAAAGTCCCTGACAATTTTTCATGTTAAAAGCCACTTGCAGGTTGCAATCTTTTCTTAA 546 0.4322 MYHSPQELNGVHNSVANVGGSENNSFNFQHHEQHLFDVPVSCLNFDSQNFLCQSSGDHSPPLFGSVVDSFLFSHEDTFCETYNVYEHFRNEKKNILEGGASAPVNGVEVVSATSGNSASSMVPTRKKGIKWTKDLHQQFVAAVNNLGGAQKATPKAVLKMMNSKSLTIFHVKSHLQVAIFS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7649g00004 181 Pfam Myb-like DNA-binding domain 130 176 IPR001005 -
Vium7649g00004 181 Gene3D - 125 178 - -
Vium7649g00004 181 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 87 176 IPR046955 GO:0003700
Vium7649g00004 181 NCBIfam myb-like DNA-binding domain, SHAQKYF class 126 177 IPR006447 GO:0003677
Vium7649g00004 181 SUPERFAMILY Homeodomain-like 124 177 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7649g00004 Vium-Chr7649 34025 34952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7649g00004 114 176 G2-like Transcription Factor Family AT5G29000 60.317 7.22e-21 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium7649g00004 Myb_DNA-binding 3.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7649g00004 - - vum:124845568 372.859