Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7649g00003 ATGAGTTTTTCTGGTTCAGTGAGCAAAGCAGCAGTACCCTCTTCCTCCTCATCACCCAACTCTTCCACTGAGTCGCTTGATGGGTTGAAATTTGGCCAGAAAATCTACTTTGAGGATGTGAGTGTTGGAGCTGCTGCAACCACTCAAGGGGCCAAAACAAGTGGTGGGGTTTCTTCTTCTTCTTCTTCTTCAAAGAAGGGAAGGGGTGGTTCAGTGCAACCGGCTCAGCCTCCTAGATGTCAGGTTCAGGGCTGCAATGCAGATCTGAGTGGAGCTAAGGCTTACTATTCTAGGCACAAAGTTTGTGCCATGCACTCCAAGTCTCCAACGGTCATTGTGGCTGGTCTGGAACAGAGGTTTTGCCAACAGTGTAGCAGGTTACCCTCTTTCTCTCTCTTTGTT 402 0.4876 MSFSGSVSKAAVPSSSSSPNSSTESLDGLKFGQKIYFEDVSVGAAATTQGAKTSGGVSSSSSSSKKGRGGSVQPAQPPRCQVQGCNADLSGAKAYYSRHKVCAMHSKSPTVIVAGLEQRFCQQCSRLPSFSLFV 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7649g00003 134 MobiDBLite consensus disorder prediction 1 26 - -
Vium7649g00003 134 ProSiteProfiles Zinc finger SBP-type profile. 77 134 IPR004333 GO:0003677
Vium7649g00003 134 MobiDBLite consensus disorder prediction 47 79 - -
Vium7649g00003 134 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 131 IPR044817 GO:0003677
Vium7649g00003 134 Pfam SBP domain 80 132 IPR004333 GO:0003677
Vium7649g00003 134 Gene3D - 76 133 IPR036893 GO:0003677|GO:0005634
Vium7649g00003 134 SUPERFAMILY SBT domain 77 130 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7649g00003 Vium-Chr7649 6767 7348 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7649g00003 29 132 SBP-box Gene Family AT2G42200 51.402 4.78e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium7649g00003 SBP 2.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7649g00003 - - vum:124845567 225.328