Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7649g00002 ATGAGTTTTTCTGGTTCAGTGAGCAAAGCAGCAGTACCCTCTTCCTCCTCATCACCCAACTCTTCCACTGAGTCGCTTGATGGGTTGAAATTTGGCCAGAAAATCTACTTTGAGGATGTGAGTGTTGGAGCTGCTGCAACCACTCAAGGGGCCAAAACAAGTGGTGGGGTTTCTTCTTCTTCTTCTTCTTCAAAGAAGGGAAGGGGTGGTTCAGTGCAACCGGCTCAGCCTCCTAGATGTCAGGTTCAGGGCTGCAATGCAGATCTGAGTGGAGCTAAGGCTTACTATTCTAGGCACAAAGTTTGTGCCATGCACTCCAAGTCTCCAACGGTCATTGTGGCTGGTCTGGAACAGAGGTTTTGCCAACAGTGTAGCAGGTTTCATCTGCTCTCTGAATTTGATCAAGGAAAGCGAAGCTGCCGCCGGCGACTTGCCGGCCATAATGAGCGCCGGCGAAAGCCTCCACCCAGCTCCATGTTAACATCTCGCAATGGCAGGCTTTCGTCCTCTATTTTTGCAGATAACAATGGTAGAGCTGGTGGCTTTCTCATGGAATTTGCTTCATATCCAAAGCTTACATTGAGAAACACCTTGCCAACTCCAAGATCAGCCGAGCCACTACCCGGAAACCATGCTGCAACCTGGCAGACCGGCTCAGACACACCATCTGAATTTTTCATGCATGGATCAGGGAGTGGTGGAACAAGCTTCATTGGTTCCAAACATCCTTTTGTGGAAAGCTACACCGGAGTCACTGACTCAAACTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCCAGAATCACACAACCAAGTGTTGAACTGAACAACAATAATAACAACAACAATAACTTGTTGAATTTCAATGGAACATCCATAACACAATTCACTGCTGCTTCCTCACAGGTTGCAGCCATCCATCAACTTCCAAATGCCACCTCATGGTACCTGAAGACCCTTGACTCGCCGGAGGGTGTTCCTGATCTCGGCCTAGGCCAAATTTCGCCGTCTCTTCATAGCCATCTTCATGGTGAGCTTGATCTGCCACATCAGGGTAGGAGGCATTACATGGATCTTGGGGATTCCAGGGCCTGTGAGTCTCCTCAGTGGTCACTTTAA 1125 0.4862 MSFSGSVSKAAVPSSSSSPNSSTESLDGLKFGQKIYFEDVSVGAAATTQGAKTSGGVSSSSSSSKKGRGGSVQPAQPPRCQVQGCNADLSGAKAYYSRHKVCAMHSKSPTVIVAGLEQRFCQQCSRFHLLSEFDQGKRSCRRRLAGHNERRRKPPPSSMLTSRNGRLSSSIFADNNGRAGGFLMEFASYPKLTLRNTLPTPRSAEPLPGNHAATWQTGSDTPSEFFMHGSGSGGTSFIGSKHPFVESYTGVTDSNCALSLLSNQTWGSRITQPSVELNNNNNNNNNLLNFNGTSITQFTAASSQVAAIHQLPNATSWYLKTLDSPEGVPDLGLGQISPSLHSHLHGELDLPHQGRRHYMDLGDSRACESPQWSL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7649g00002 374 MobiDBLite consensus disorder prediction 1 26 - -
Vium7649g00002 374 Gene3D - 70 141 IPR036893 GO:0003677|GO:0005634
Vium7649g00002 374 MobiDBLite consensus disorder prediction 143 166 - -
Vium7649g00002 374 SUPERFAMILY SBT domain 78 159 IPR036893 GO:0003677|GO:0005634
Vium7649g00002 374 ProSiteProfiles Zinc finger SBP-type profile. 77 154 IPR004333 GO:0003677
Vium7649g00002 374 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 343 IPR044817 GO:0003677
Vium7649g00002 374 FunFam Squamosa promoter-binding-like protein 14 71 141 - -
Vium7649g00002 374 MobiDBLite consensus disorder prediction 47 80 - -
Vium7649g00002 374 Pfam SBP domain 80 153 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7649g00002 Vium-Chr7649 1747 6089 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7649g00002 29 374 SBP-box Gene Family AT2G42200 42.627 6.96e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium7649g00002 SBP 5.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7649g00002 - - gmx:100789301 550.821