Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7649g00001 ATGAGTTTTTCTGGTTCAGTGAGCAAAGCAGCAGTACCCTCTTCCTCCTCATCACCCAACTCTTCCACTGAGTCGCTTGATGGGTTGAAATTTGGCCAGAAAATCTACTTTGAGGATGTGAGTGTTGGAGCTGCTGCAACCACTCAAGGGGCCAAAACAAGTGGTGGGGTTTCTTCTTCTTCTTCTTCTTCAAAGAAGGGAAGGGGTGGTTCAGTGCAACCGGCTCAGCCTCCTAGATGTCAGGTTCAGGGCTGCAATGCAGATCTGAGTGGAGCTAAGGCTTACTATTCTAGGCACAAAGTTTGTGCCATGCACTCCAAGTCTCCAACGGTCATTGTGGCTGGTCTGGAACAGAGGTTTTGCCAACAGTGTAGCAGGTTTCATCTGCTCTCTGAATTTGATCAAGGAAAGCGAAGCTGCCGCCGGCGACTTGCCGGCCATAATGAGCGCCGGCGAAAGCCTCCACCCAGCTCCATGTTAACATCTCGCAATGGCAGGCTTTCGTCCTCTATTTTTGATAACAATGGTAGAGCTGGTGGCTTTCTCATGGAATTTGCTTCATATCCAAAGCTTACATTGAGAAACACCTTGCCAACTCCAAGATCAGCCGAGCCACTACCCGGAAACCATGCTGCAACCTGGCAGACCGGCTCAGACACACCATCTGAATTTTTCATGCATGGATCAGGGAGTGGTGGAACAAGCTTCATTGGTTCCAAACATCCTTTTGTGGAAAGCTACACCGGAGTCACTGACTCAAACTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCCAGAATCACACAACCAAGTGTTGAACTGAACAACAATAATAACAACAACAATAACTTGTTGAATTTCAATGGAACATCCATAACACAATTCACTGCTGCTTCCTCACAGGTTGCAGCCATCCATCAACTTCCAAATGCCACCTCATGGTACCTGAAGACCCTTGACTCGCCGGAGGGTGTTCCTGATCTCGGCCTAGGCCAAATTTCGCCGTCTCTTCATAGCCATCTTCATGGTGAGCTTGATCTGCCACATCAGGGTAGGAGGCATTACATGGATCTTGGGGATTCCAGGGCCTGTGAGTCTCCTCAGTGGTCACTTTAA 1122 0.4857 MSFSGSVSKAAVPSSSSSPNSSTESLDGLKFGQKIYFEDVSVGAAATTQGAKTSGGVSSSSSSSKKGRGGSVQPAQPPRCQVQGCNADLSGAKAYYSRHKVCAMHSKSPTVIVAGLEQRFCQQCSRFHLLSEFDQGKRSCRRRLAGHNERRRKPPPSSMLTSRNGRLSSSIFDNNGRAGGFLMEFASYPKLTLRNTLPTPRSAEPLPGNHAATWQTGSDTPSEFFMHGSGSGGTSFIGSKHPFVESYTGVTDSNCALSLLSNQTWGSRITQPSVELNNNNNNNNNLLNFNGTSITQFTAASSQVAAIHQLPNATSWYLKTLDSPEGVPDLGLGQISPSLHSHLHGELDLPHQGRRHYMDLGDSRACESPQWSL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7649g00001 373 MobiDBLite consensus disorder prediction 1 26 - -
Vium7649g00001 373 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 342 IPR044817 GO:0003677
Vium7649g00001 373 SUPERFAMILY SBT domain 78 159 IPR036893 GO:0003677|GO:0005634
Vium7649g00001 373 ProSiteProfiles Zinc finger SBP-type profile. 77 154 IPR004333 GO:0003677
Vium7649g00001 373 Gene3D - 70 141 IPR036893 GO:0003677|GO:0005634
Vium7649g00001 373 MobiDBLite consensus disorder prediction 143 169 - -
Vium7649g00001 373 FunFam Squamosa promoter-binding-like protein 14 71 141 - -
Vium7649g00001 373 MobiDBLite consensus disorder prediction 47 80 - -
Vium7649g00001 373 Pfam SBP domain 80 153 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7649g00001 Vium-Chr7649 1747 6089 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7649g00001 29 373 SBP-box Gene Family AT2G42200 42.895 1.57e-59 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium7649g00001 SBP 5.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7649g00001 - - gmx:100789301 555.444