Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7644g00012 ATGGAGATGAGTATGTTGGCTCCTTCCTTCCCTGGCTTCGCTAAACCCTCTGCAACTGTAAAACCTTCTCTTCTTACGCTCAGGGCATCTTCTCTGCGCCATGACTACCCTCTTGCGAGCAAAATTGTTGTTAAGAATTTACCCTATTCTACTGGTGAGATTACTTTGCAAAAGGAATTTTCTAATTTTGGAAAGATAGCTGAAGTTAAAATGGTTAAAGATATGAAAACGAAAAGATCCAAGGGTATTGCTTTCATTCAATATACATGCCAAGATGATGCCATGCTTGCACTAGAAACCATGGATCAGAAGGATTTTTATGGTCGAACAATCTATGTGGAAATTGCTAGATTGGGTTGGGATTGTTTTGGTGCAACCCCAAGGGCCTCAGGACCCCCAAAGAAGTGGAATTTGCCAGAGCAAGAAGAAGTGGTAGATTGTTGGTACTGA 450 0.4156 MEMSMLAPSFPGFAKPSATVKPSLLTLRASSLRHDYPLASKIVVKNLPYSTGEITLQKEFSNFGKIAEVKMVKDMKTKRSKGIAFIQYTCQDDAMLALETMDQKDFYGRTIYVEIARLGWDCFGATPRASGPPKKWNLPEQEEVVDCWY 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7644g00012 149 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 34 121 - -
Vium7644g00012 149 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 111 IPR000504 GO:0003723
Vium7644g00012 149 FunFam glycine-rich RNA-binding protein 4, mitochondrial 28 143 - -
Vium7644g00012 149 SMART rrm1_1 41 114 IPR000504 GO:0003723
Vium7644g00012 149 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Vium7644g00012 149 Gene3D - 28 141 IPR012677 -
Vium7644g00012 149 SUPERFAMILY RNA-binding domain, RBD 39 117 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7644g00012 18 140 Eukaryotic Initiation Factors Gene Family AT2G36660 28.000 5.76e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7644g00012 - - pvu:PHAVU_002G189500g 280.411