Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium7644g00012 | ATGGAGATGAGTATGTTGGCTCCTTCCTTCCCTGGCTTCGCTAAACCCTCTGCAACTGTAAAACCTTCTCTTCTTACGCTCAGGGCATCTTCTCTGCGCCATGACTACCCTCTTGCGAGCAAAATTGTTGTTAAGAATTTACCCTATTCTACTGGTGAGATTACTTTGCAAAAGGAATTTTCTAATTTTGGAAAGATAGCTGAAGTTAAAATGGTTAAAGATATGAAAACGAAAAGATCCAAGGGTATTGCTTTCATTCAATATACATGCCAAGATGATGCCATGCTTGCACTAGAAACCATGGATCAGAAGGATTTTTATGGTCGAACAATCTATGTGGAAATTGCTAGATTGGGTTGGGATTGTTTTGGTGCAACCCCAAGGGCCTCAGGACCCCCAAAGAAGTGGAATTTGCCAGAGCAAGAAGAAGTGGTAGATTGTTGGTACTGA | 450 | 0.4156 | MEMSMLAPSFPGFAKPSATVKPSLLTLRASSLRHDYPLASKIVVKNLPYSTGEITLQKEFSNFGKIAEVKMVKDMKTKRSKGIAFIQYTCQDDAMLALETMDQKDFYGRTIYVEIARLGWDCFGATPRASGPPKKWNLPEQEEVVDCWY | 149 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium7644g00012 | 149 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED | 34 | 121 | - | - | |
Vium7644g00012 | 149 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 42 | 111 | IPR000504 | GO:0003723 | |
Vium7644g00012 | 149 | FunFam | glycine-rich RNA-binding protein 4, mitochondrial | 28 | 143 | - | - | |
Vium7644g00012 | 149 | SMART | rrm1_1 | 41 | 114 | IPR000504 | GO:0003723 | |
Vium7644g00012 | 149 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 40 | 118 | IPR000504 | GO:0003723 | |
Vium7644g00012 | 149 | Gene3D | - | 28 | 141 | IPR012677 | - | |
Vium7644g00012 | 149 | SUPERFAMILY | RNA-binding domain, RBD | 39 | 117 | IPR035979 | GO:0003676 |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium7644g00012 | 18 | 140 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 28.000 | 5.76e-06 | 43.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium7644g00012 | - | - | pvu:PHAVU_002G189500g | 280.411 |