Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7640g00011 ATGGGCGGGAGCGAGAGCTCGAAAGGCGTGGTTTTGGGTCGTTTGGTTGAGTTCATCAAGGAGATTTCTGGGTTGCCAGAGTGTCAGAACTTTTGCAAGAGGGTGTATGGGAATTTGGTTCGCAGGGTGAAGCTTCTGAGTCCTCTCTTTGAGGAATTGAAAGATAGTGATGAGTCCCTCAGCGATGAACTACTCGAGAGCTTCGAGTCTCTCTTGGTTGCTTTGGATTCAGCTAAGACCCTTTTAAAGTCTGTCAACCAAGGGAGCAAGCTATATCAGGCATTGAGGAGGAATGATACAGCAGACAAATTCCAACAAGTAACTGAAAAAATTGAAGCTGCGCTGAGTGAAATTCCTTACTACAAACTTGAGATATCAGAGGAAGTTCGAGAACAGATTCAACTGGTACATGCTCAATTCAAAAGAGCTAAAGCTCAAACAGAATTTGCTGATATACAACTTGACATGGATATGGCAATGGCACAAAAAGAAAAAGACCCTGATCCTGCTATACTAAAAAGGCTTTCTGAGAAGTTGCATCTGAGGACAATAAATGACCTAAGGAAAGAGTCTAGTGAATTACATGAATTGTTGATCACAAATGGTGGAGAACTAGGAGACTCTTTTGAAATGATCACATCCCTTCTTAGCAAGCTGAGGGACTGTGTGCTCACAGAAAATCCCGAAGTCGACACAAGTGAATGTGAAAAATTAACAATTAAGCACAGGTCTCCCGTGATCCCAGATGATTTTCGATGTCCTATATCTCTTGAACTAATGAAAGATCCTGTTATTGTCTCTACTGGTCAGACATATGAAAGATCTTGCATTCAAAAATGGCTTGATGCGGGTCACAAAACCTGCCCCAAGACACAGCAGACACTTGTCCACACAGCCCTTACCCCGAACTATGTTCTGAAGAGTCTGATTGCTTTGTGGTGTGAAAGCAATGGTATTGAGCTACCAAAAAAACAAGGGAGTTGTAGAACAAAGAAATGTGGTGGAAGCAGTCATTCAGATTGTGATCGAACTGCTATCAGTGCCTTACTTGATAAACTGGCGAGTAACAACATAGAGCAGCAAAGGGCAGCTGCTGGTGAGCTCCGGTTGCTGGCTAAGAGGAATGCAGATAATCGAGTGTGCATTGCTGAGGCCGGAGCAATACCGCCCCTTGTAGATTTGTTGTCTTCTTCAGACCCTCGAACCCAAGAGCATGCCGTTACAGCGCTTCTCAATCTTTCCATCAATGAGAGTAACAAAGGAACTATTGTAAATGCCGGAGCCATACCAGATATTGTAGATGTTCTAAAAAAGGGAAGCATGGAGGCTAGAGAAAATGCAGCTGCAACTCTCTTTAGTTTATCAGTACTGGACGAGAACAAGGTGCAAATAGGTGCAGCTGGAGCAATCCCCGCCCTTATAAAGTTACTTTGTGAAGGTACTCCCAGAGGTAAGAAGGATGCTGCTACTGCAATTTTTAACCTATCTATTTATCAGGGAAACAAAGCAAGAGCTGTAAAGGCTGGTATAGTAGGCCCGCTGATACAATTTCTGAAGGATGCTGGGGGTGGAATGGTAGATGAAGCACTAGCTATATTGGCAATTCTTGCAAGCCACCATGAAGGCAGGGTGGCGATTGGTCAGGCCGGACCGATCCCTATTCTAGTTGAGGTTATACGAACCGGCTCTCCACGCAACAGAGAGAATGCTGCCGCCGTCTTGTGGTCACTATGCACCGGAGATCCGCTGCTATTAAAACTAGCAAAAGAACACGGTGCCGAAGCAGCACTGCAGGAGTTATCAGAAAATGGAACTGATAGAGCGAAGAGAAAAGCTGGAAGCATAATAGAACTCTTGCAGCGAATAGAAGGGGATGATAATCTGCGGAATTCTTAG 1896 0.4446 MGGSESSKGVVLGRLVEFIKEISGLPECQNFCKRVYGNLVRRVKLLSPLFEELKDSDESLSDELLESFESLLVALDSAKTLLKSVNQGSKLYQALRRNDTADKFQQVTEKIEAALSEIPYYKLEISEEVREQIQLVHAQFKRAKAQTEFADIQLDMDMAMAQKEKDPDPAILKRLSEKLHLRTINDLRKESSELHELLITNGGELGDSFEMITSLLSKLRDCVLTENPEVDTSECEKLTIKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLVHTALTPNYVLKSLIALWCESNGIELPKKQGSCRTKKCGGSSHSDCDRTAISALLDKLASNNIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPPLVDLLSSSDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKKGSMEARENAAATLFSLSVLDENKVQIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLSIYQGNKARAVKAGIVGPLIQFLKDAGGGMVDEALAILAILASHHEGRVAIGQAGPIPILVEVIRTGSPRNRENAAAVLWSLCTGDPLLLKLAKEHGAEAALQELSENGTDRAKRKAGSIIELLQRIEGDDNLRNS 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7640g00011 631 ProSiteProfiles U-box domain profile. 246 320 IPR003613 GO:0004842|GO:0016567
Vium7640g00011 631 FunFam RING-type E3 ubiquitin transferase 247 320 - -
Vium7640g00011 631 FunFam RING-type E3 ubiquitin transferase 458 630 - -
Vium7640g00011 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 469 IPR000225 GO:0005515
Vium7640g00011 631 SUPERFAMILY RING/U-box 246 322 - -
Vium7640g00011 631 FunFam RING-type E3 ubiquitin transferase 8 121 - -
Vium7640g00011 631 Pfam Armadillo/beta-catenin-like repeat 458 496 IPR000225 GO:0005515
Vium7640g00011 631 Pfam Armadillo/beta-catenin-like repeat 375 414 IPR000225 GO:0005515
Vium7640g00011 631 CDD RING-Ubox_PUB 248 300 IPR045210 -
Vium7640g00011 631 PANTHER U BOX DOMAIN-CONTAINING 34 619 - -
Vium7640g00011 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 386 428 IPR000225 GO:0005515
Vium7640g00011 631 Pfam U-box domain 247 317 IPR003613 GO:0004842|GO:0016567
Vium7640g00011 631 CDD MLKL_NTD 32 141 - -
Vium7640g00011 631 SMART arm_5 498 538 IPR000225 GO:0005515
Vium7640g00011 631 SMART arm_5 416 456 IPR000225 GO:0005515
Vium7640g00011 631 SMART arm_5 457 497 IPR000225 GO:0005515
Vium7640g00011 631 SMART arm_5 539 579 IPR000225 GO:0005515
Vium7640g00011 631 SMART arm_5 375 415 IPR000225 GO:0005515
Vium7640g00011 631 Gene3D - 459 623 IPR011989 -
Vium7640g00011 631 Gene3D - 331 458 IPR011989 -
Vium7640g00011 631 Gene3D - 11 121 IPR036537 GO:0007166
Vium7640g00011 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 320 IPR013083 -
Vium7640g00011 631 SMART Ubox_2 250 313 IPR003613 GO:0004842|GO:0016567
Vium7640g00011 631 SUPERFAMILY ARM repeat 343 619 IPR016024 -
Vium7640g00011 631 FunFam RING-type E3 ubiquitin transferase 325 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7640g00011 Vium-Chr7640 52487 56538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7640g00011 11 624 U-box Gene Family AT3G54850 67.590 0.0 825
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7640g00011 - - gmx:100777452 1123.61