Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7628g00001 ATGGGAAGAGCTCCTTGTTGTGAGAAAGTAGGGTTGAAGAAAGGGAGGTGGACATCAGAGGAAGATGAGATCTTGGCCAAATACATTCAGGCCAATGGAGAAGGTTCTTGGAGGTCATTGCCTAAGAATGCAGGATTATTGAGGTGTGGCAAGAGTTGCAGACTCAGATGGATTAACTATTTGAGAGCTGACCTTAAAAGAGGAAACATTTCTGCTCAAGAGGAGAACACCATCGTCAAGTTGCACGCTTCTTTGGGTAACAGATGGTCTATGATAGCAAGTCATTTGCCAGGAAGAACAGACAACGAGATTAAGAATTACTGGAATTCTCACCTGAGCAGGAAAATTTACAGTTTCCCAAAGATGGAGAACCAACAAGGTGATACACCTAAAGTGGTGTGTGTTCCTCCGAAGAGAAAAGGTGGCAGAACAAGCCGTTGGGCAATGAAGAAGAACAAAAACTACATCGTAAATGCGGACAGAAGCAAACAGAGTTTGAGTGAAGAAAATATTACTGTTAGCATAGTTCCAAAGGCAGGCAGTTTGTGGACAGAGGGTAGAAGGGAAACAAAGGTAGATGAAAAGAGTGAAAAGGAGAAAAGTAGCGATGAGGAGATCTTAAAAGTGTGTGAAATTGAGGGCATTGAAGAGGGGATGAGTGAGATGTTGGAAAGTTGCTTGGCAGAAACATGTGGGGTTTGGGACATAAATGAGGAGAGAGAGAGTAATGATATGGAAATGGTGGCTAGTGGTGATGCGTGTCTCAACAAAACATCGTCGTGTGATAGTAGCGTCAACGGTTATTCGTCTTCTTCTTCCGTGGCCCAGGGCTTGGATCAACACTGGGATTGGGAGAGCGTGATAGAGTTCAATAACATTGTTGAGTCCCAACTCGCTTCTGACCATTTTAATCACAAAGATGAACTGCTCACGTGGCTGTGGGAGGACGACAATTGGGTGGGAGAGACAGATTTAAAGATACAAGACAACGTCGTCGATTGGCTTCTCTCTTGA 1014 0.4408 MGRAPCCEKVGLKKGRWTSEEDEILAKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISAQEENTIVKLHASLGNRWSMIASHLPGRTDNEIKNYWNSHLSRKIYSFPKMENQQGDTPKVVCVPPKRKGGRTSRWAMKKNKNYIVNADRSKQSLSEENITVSIVPKAGSLWTEGRRETKVDEKSEKEKSSDEEILKVCEIEGIEEGMSEMLESCLAETCGVWDINEERESNDMEMVASGDACLNKTSSCDSSVNGYSSSSSVAQGLDQHWDWESVIEFNNIVESQLASDHFNHKDELLTWLWEDDNWVGETDLKIQDNVVDWLLS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7628g00001 337 SMART sant 66 114 IPR001005 -
Vium7628g00001 337 SMART sant 13 63 IPR001005 -
Vium7628g00001 337 Gene3D - 70 133 - -
Vium7628g00001 337 FunFam Myb transcription factor 71 116 - -
Vium7628g00001 337 CDD SANT 16 61 IPR001005 -
Vium7628g00001 337 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium7628g00001 337 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vium7628g00001 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium7628g00001 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vium7628g00001 337 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 231 - -
Vium7628g00001 337 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vium7628g00001 337 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium7628g00001 337 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium7628g00001 337 CDD SANT 71 112 IPR001005 -
Vium7628g00001 337 FunFam Myb transcription factor 11 67 - -
Vium7628g00001 337 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7628g00001 Vium-Chr7628 13114 18126 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7628g00001 1 150 MYB Transcription Factor Family AT2G47460 69.811 8.21e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium7628g00001 Myb_DNA-binding 5.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7628g00001 K09422 - gmx:100793350 409.838