Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7618g00002 ATGGATTTGAAGTCCTCTCATGTTTCTCCTGTTCTCACTGACCCTGTTCCCGTCAATAAGTCAAGGCTTGGAATGCATTCTAGTCTGCTAGCTTATTCCCAGCAAGATTCACCAGTCTCTCCGGGGAAGTACTCAAGAAGCAATTCAAGGAAAAGTACAGGGAGTGTCGATGATGTGAGGTCCAATGGTTGGTTGGATGCCATGAAGGCTTCTTCCCCTCCAAGGAAGAAGCTACTTAAAGGGTCCAGTTTTCAGATTGCTTCAATTGACTTTGAGATTGAAGATTATTGTACATGGATGCTTGAATATCCTTCAGCACTAGACTCTTTTGAGAAAATCATTGACCTTGCTCAGAATAAGAAGATTGCTATGTTTCTAGACTATGACGGCACACTTTCACCGATTGTAGACGATCCGGATTGTGCCTTTATGTCCGAATCTATGCGAACAACTGTGAGAAGTGTGGCAACATATTTCCCCACAGCAATCATCAGTGGAAGAAGCCGTGACAAGGTTTTTGATCTTGTTAAACTAACAGAACTGTACTACGCTGGTAGTCATGGGATGGACATTATTGGCCCTGTCAGTGAGACTTTGTCCAAAAACCACCCTAATTGTGTAAAGTCTACAGACCATGAGGGAAAGGAAACAACTCTCTTTCAACCTGCGAGAGAATTCCTGCCTATGGTTGATGAGGTTTTTAGAACCCTCGTCGAGATTACTAAAGATATAGAAGGCGTAAAAGTTGAAAATCACAAATTTTGCGTTTCTGTACATTACCGTAATGTAGAGGAGAATAATTGGACAATAGTTGGACAACGTGTCCATGATGTCTTGCAAAATTACCCTCGTTTATGTTCAGCTCATGGACGGAAGGTTTTAGAAGTTCGTCCTGTGATTGACTGGAATAAAGGAAAAGCTGTTGAGTTTTTACTTGAATCTCTAGGATTTAATGATAGTGATGGTGTGCTTCCCATCTACATTGGAGATGATAAAACTGATGAAGATGCATTCAAGGTGCTGCGAGAGAGCAATAGAGGTTATGGGATTTTGGTTTCGTCGGTGAGGAAAGAAAGCAATGCCTTCTACTCTCTTCGAGACCCCAATGAGGTCATGAAATTTCTCCAACTCTTGGTGAACTGGAAAAGACAAGAAAGAAAGCATGGGAAGATGTAA 1176 0.4175 MDLKSSHVSPVLTDPVPVNKSRLGMHSSLLAYSQQDSPVSPGKYSRSNSRKSTGSVDDVRSNGWLDAMKASSPPRKKLLKGSSFQIASIDFEIEDYCTWMLEYPSALDSFEKIIDLAQNKKIAMFLDYDGTLSPIVDDPDCAFMSESMRTTVRSVATYFPTAIISGRSRDKVFDLVKLTELYYAGSHGMDIIGPVSETLSKNHPNCVKSTDHEGKETTLFQPAREFLPMVDEVFRTLVEITKDIEGVKVENHKFCVSVHYRNVEENNWTIVGQRVHDVLQNYPRLCSAHGRKVLEVRPVIDWNKGKAVEFLLESLGFNDSDGVLPIYIGDDKTDEDAFKVLRESNRGYGILVSSVRKESNAFYSLRDPNEVMKFLQLLVNWKRQERKHGKM 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7618g00002 391 MobiDBLite consensus disorder prediction 34 58 - -
Vium7618g00002 391 FunFam Trehalose 6-phosphate phosphatase 122 211 - -
Vium7618g00002 391 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 32 387 IPR044651 GO:0004805|GO:0005992
Vium7618g00002 391 FunFam Trehalose 6-phosphate phosphatase 229 388 - -
Vium7618g00002 391 Pfam Trehalose-phosphatase 125 368 IPR003337 GO:0003824|GO:0005992
Vium7618g00002 391 Gene3D - 218 391 IPR023214 -
Vium7618g00002 391 Gene3D - 122 211 IPR023214 -
Vium7618g00002 391 CDD HAD_TPP 123 373 - -
Vium7618g00002 391 NCBIfam trehalose-phosphatase 223 379 IPR003337 GO:0003824|GO:0005992
Vium7618g00002 391 SUPERFAMILY HAD-like 123 383 IPR036412 -
Vium7618g00002 391 FunFam Trehalose 6-phosphate phosphatase 223 299 - -
Vium7618g00002 391 NCBIfam HAD-IIB family hydrolase 124 342 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7618g00002 Vium-Chr7618 3982 9957 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7618g00002 109 375 Trehalose Biosynthesis Gene Families AT1G23870 26.502 4.64e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7618g00002 K01087 - qsa:O6P43_024315 590.882