LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium7614g00002	ATGTGTACACTCTTCAACATTCTTCTTTTGCTTCTCACACTTTCTTCTTGTTCTTCTTCTTCTTCACACCCTCACCCTCGCCGTGTTCTTCACCAACCCCTCTTCCCCAGAATCTCTATCCCTCCAACACATCCTCCAGCTTTATCCCCTCAACCCCAAAAGCAACACCATTTACCCAAGTTTCCATTTTCATCTTCTTCATCGTTCTCGCCTCCACCACCGCAAAAACCTTTCTTTCCTTCTTACCATTCCCCTCCACTCCCTCCTTCCCCCACCGTCGTTGCTACTTTCCCCGCTAACATCTCCTCCCTCCTCCTCCCCCACCCCTACTCTCACCACCACCGCTCCGCCGCCGCCCTCGCCGTCTCCCTCTCCCTCTTCTCCCTCGCCCTCCTCGCTGCCGCCGCGTTCTTTCTCCTCCACCGCCGCCGCGCTAACAGGACTTCCTCCTCCGACGCCACCCATGACGACGACGATGAGAAAGGCTCGAGATCCGACAGCCTCCGCCTGTTCCCGCCGAACGCCGCCGCCTCCGACGGCGTCGATAGAAAACCCCGCGGAAAGTCCTCCCCGACGTCGGAGCTGCTCTACCTCGGCACGGTAGCGAACTCGGTGAACTCAACGCTAGACACAAGCTCAAGCCCCCACGACGACGGTTTCCGGCCACCGTATCAAAAACTCGGCGACTCGCCGGAACTGAACCCACTCCCACCTTTGCCACGTCACAAATTCAAACCATGGATGAATGAAGATGACGGTGATAAAAATGTGAAAGAAAAAGTGGAACAACAAGAAGAGGCAGAAAAAGAAGAAGAAGATGAACAGTTTTTTTCTCCAAGAAGTTCTTCTGGTGGGAACAATCAACATAGTCCTCCTTCTCCTTTAGCCGTTGCTGCTTCAAGTTCGCACGTGAATAATAAAATCAGTTCTACAAGCTTCACTTCTCGAACCCCTTCGTACCCTCGTTCCAATTCCCTCTCTTTCTCTCGTTCCCCGTCTCTTAATTTCAGCCCCGCAAGTGTTAAATCACTCCCTCCGCACAACCATGCTTCTCCTTCTTTCTCTTCATCATCTTCTTCTCCCAGGGAAGAATGGCATGTTCCTTCAAGGGACCAAAATTCTCCCGCGAGAAATTTACCTCCTCCACCACCGCCGCCACCTCCGCCGCCTCGGATTTGGGAAGCTCCAGTTTCTGTTAGGAAAGTGAGCGAGGAGACACCGAAGCCAAAGTTGAAAGCTTTACATTGGGATAAAGTGAAGGCCAGCTCGGACAGGGTCATGGTTTGGGACCAGTTGAGACCCAGTTCTTTTCAGTTGAACGAGGATATGATTGAAACGCTTTTTATGGTAAATAATTCCAAGGAGGGTGTCGGGGTTGCGATTAGAGACAATGCTCGGCGCCACATAGTTCATTCTGCTTCTCCCATGCCCATGGAGAATAGGGTCCTTGACCCTAAGAAGTCTCAGAACATTGCCATTTTGCTTAGGGCTCTCAATGTTACCATTGATGAAGTTTGTGATGCCCTCAGAGAAGGAAATTGTGATACGTTGGGAACAGAACTTCTTGAAAGTTTGTTAAAGATGGCTCCGACTAAAGATGAAGAATCTAAGCTGAAGGAATTTCAAGATGAATCGCCCTTCAAGCTTGGCCCAGCTGAGAAATTTCTCAAAGTTGTTCTTGATATACCTTTCGCTTTTAAGAGAGTGGATGCTATGCTCTACATTGCTAATTTTGATTCAGAATTAGAATACCTTAAAAAGTCCTTTGAAACTCTGGAGGTGGCCTGTGAGGAATTAAAGAATAGTCGAATGTTTTTGAAGATACTTGAAGCAGTGTTAAGAACTGGAAATAGAATGAATGTTGGCACCAATCGTGGTGATGCTCATGCGTTCAAACTGGACACACTTTTGAAGTTAGCTGATATTAAAGGAACTGATGGAAAGACTTCTCTGTTGCATTTTGTTGTACAGGAAATTGTCAGAACCGAGGGTTCTCATGTTTCTGGTTCTAACCATCAACATGCCTCTGACAATGTCCAGCAATACAGTCTTCAAGATGAGGTTGACTTGAAAAAGCTTGGTCTGCAAATTGTTTCGGGACTTAGCGGGGAGCTCACCAATGTTAAAAAAGCAGCTGCTATGGATTCAGACATGCTCAGTAGTGATGTTGCCAAACTTGCCAGAGGAATTGACAAAGTTATGCAAGTAGTGAAATTGAATGAGGAGTCTCCTTTGAAAGAAACTAACCAAAAGTTTTCGGAGGCGATGACAGGTTTCTTGGAAAGGGGAGAGCAAGAGATTTCAACAATCCAGGCCCAAGAGAAAAATTGTTTCTCTTCGGTGAAGGAGATAACTGAGTATTTCCATGGAAATTCGGCAAAGGAAGAAGCTCATCCATTTAGAATTTTTATGGTTGTGAGGGATTTCCTTTCTATTCTAGATGGTGTTTGCAAGGAAGTTGGTAAAGTGAATGAGAGAACTTTGGTTGGTTCGCGTCATTCTGTAATGCCTGCAAATCCTATAATGCAATCCTTTTTTCCTGAGATTATTGGTAAGCAACCATCCGATTCCTCCGAATCTGACTAA	2586	0.4691	MCTLFNILLLLLTLSSCSSSSSHPHPRRVLHQPLFPRISIPPTHPPALSPQPQKQHHLPKFPFSSSSSFSPPPPQKPFFPSYHSPPLPPSPTVVATFPANISSLLLPHPYSHHHRSAAALAVSLSLFSLALLAAAAFFLLHRRRANRTSSSDATHDDDDEKGSRSDSLRLFPPNAAASDGVDRKPRGKSSPTSELLYLGTVANSVNSTLDTSSSPHDDGFRPPYQKLGDSPELNPLPPLPRHKFKPWMNEDDGDKNVKEKVEQQEEAEKEEEDEQFFSPRSSSGGNNQHSPPSPLAVAASSSHVNNKISSTSFTSRTPSYPRSNSLSFSRSPSLNFSPASVKSLPPHNHASPSFSSSSSSPREEWHVPSRDQNSPARNLPPPPPPPPPPPRIWEAPVSVRKVSEETPKPKLKALHWDKVKASSDRVMVWDQLRPSSFQLNEDMIETLFMVNNSKEGVGVAIRDNARRHIVHSASPMPMENRVLDPKKSQNIAILLRALNVTIDEVCDALREGNCDTLGTELLESLLKMAPTKDEESKLKEFQDESPFKLGPAEKFLKVVLDIPFAFKRVDAMLYIANFDSELEYLKKSFETLEVACEELKNSRMFLKILEAVLRTGNRMNVGTNRGDAHAFKLDTLLKLADIKGTDGKTSLLHFVVQEIVRTEGSHVSGSNHQHASDNVQQYSLQDEVDLKKLGLQIVSGLSGELTNVKKAAAMDSDMLSSDVAKLARGIDKVMQVVKLNEESPLKETNQKFSEAMTGFLERGEQEISTIQAQEKNCFSSVKEITEYFHGNSAKEEAHPFRIFMVVRDFLSILDGVCKEVGKVNERTLVGSRHSVMPANPIMQSFFPEIIGKQPSDSSESD	861

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium7614g00002	861	Coils	Coil	254	274	-	-
	Vium7614g00002	861	MobiDBLite	consensus disorder prediction	278	363	-	-
	Vium7614g00002	861	MobiDBLite	consensus disorder prediction	375	394	-	-
	Vium7614g00002	861	MobiDBLite	consensus disorder prediction	207	394	-	-
	Vium7614g00002	861	MobiDBLite	consensus disorder prediction	146	194	-	-
	Vium7614g00002	861	MobiDBLite	consensus disorder prediction	66	83	-	-
	Vium7614g00002	861	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	380	826	-	-
	Vium7614g00002	861	Gene3D	Formin, FH2 domain	407	835	IPR042201	-
	Vium7614g00002	861	SMART	it6_source	401	828	IPR015425	-
	Vium7614g00002	861	Pfam	Formin Homology 2 Domain	404	813	IPR015425	-
	Vium7614g00002	861	MobiDBLite	consensus disorder prediction	41	83	-	-
	Vium7614g00002	861	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	401	839	IPR015425	-
	Vium7614g00002	861	MobiDBLite	consensus disorder prediction	146	166	-	-
	Vium7614g00002	861	MobiDBLite	consensus disorder prediction	244	265	-	-
	Vium7614g00002	861	Coils	Coil	582	602	-	-
	Vium7614g00002	861	PANTHER	FORMIN-RELATED	11	852	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium7614g00002	Vium-Chr7614	9186	13449	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium7614g00002	16	861	FH2 protein (formin) Gene Family	AT2G43800	45.981	0.0	606

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium7614g00002	-		-	vun:114175163	1460.28