Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7613g00002 ATGTGGAGAGAGGCAGCATTGTTGATGGTACTGCTCCTTCTATTCCTCCAAATTTGTGCTGCCAAGTACTATCAAGAACACCTTTGTCCCCCTTCTTCCTGTGGAAAAATCACCAACATAAAGGAACCGTTTCGATTACAAGGCGACCCATATAAGTGTGGTGACGAAAGGTATGAGCTTGGTTGTGAGAATAATGTTACTGTGTTGTATCTGCTCTCTGCAAAATATCACGTGGAGGCAATAAACTACGAGAACTACACAGTGAGAGTGGTTGATCCTGCACTTCAACATCACAATTGCTCCTCCCTTCCTCTCCATTCCCTCTCTCGCTCCAATTTCTCTGATACTTACACTCACCGTTACTTCGATCAATACCAAGCTGGTCTAGGAGAATATCATAATTGGGAATCTCTGAATTTCGAGCATATAGTGTTTTTGAACTGTAAGCATTCGGCGAGAGAGAATGGAAAGTATGTGGAGAGTGGTGAGTGCGTGAAGTGGGACTCAAAGGGCTATGCATATGCAGTTGGTGGTGACCTAAAAGCTGAAGACTTAGAAGTTGGGTGCGACGTAAAGCTTGTTGCTCCAACATCTTTGAGGAGTTTGAATTACGATTCCTACACTGCCATACACAGGGGACTGGCCTATGGATTTGAGATTTCATGGGTAAACCTCGCCTGTCAGAATCATTGTCCATTCCACGGATTCTGCAATTTCAACTCTAAGAGCCAAAATCTTGAGGCATGGGCTAACAAAATTTTGTTTGGATGGCCTTTCTTAATTGTAATTTTCATATTGAAATGGAAAAAACGACATGCATCAAGGTATGAAAATATTGAAAATTATCTGGAGCAAAATCACTTGGTGCCTATTAGATACTCATACAAGGAAATTAAGAAGATGACTGAAGGTTTCAAAGAGAAGTTAGGTAAAGGAGGATTTGGTGACGTGTTTAAGGCAAAGTTGCGGAGTGGACCTTTCGTGGCAATCAAAATGTTAGACAAATCTAAAGGTAATGGACAAGATTTTATCAATGAAGTTGCAACCATTGGAAGAATACATCATCAAAATGTGGTACAATTAATTGGATTTTGTGTTAGTGGCTCAAAGCGTGCTCTTGTTTATGAATTCATGCCCAATGGATCTCTTGATAAATTTATATTTTCAAGCGATGGAAATACAAATTTTAGCTATGAAAAAATATACAAGATATCGATTGGAGTAGCTCGTGGAATTGCCTATCTCCATCATGGGTGTGAGATGCAAATTTTGCACTTTGATATCAAACCCCATAACATCTTATTGGATGAAAACTTCATCCCAAAGGTTTCTGATTTTGGATTAGCAAAGTTATATCCAATAGATAATAGCGTTGTCACGATGACGACAGGAAGAGGAACCATTGGATATATGGCTCCAGAATTATTTTACAATAATATTGGAGGAATATCCCACAAAGCTGATGTTTATAGCTTCGGAATGTTGTTGATGGAGATGGCAAGCAAGAGAAAGAATCTAAATCCTTATGCAGAACACTCAAGCCAACTTTACTTTCCCCTTTGGATTTATAATCATATTAGAGAAGAGGAAGATATAAATATAAAGGATTTGAGCGAAGAGGAAAAACTAATAGTAAAAAAAATGATCATAGTTGCACTTTGGTGTATACAGTTAAAACCAAATGATCGTCCTTCAATGAATAAAGTAGTGGAAATGCTTGAAGGAGACATTGAAGATTTGGAAATACCTCCAAAACCTATTTTATTTCCTGATGAGAAATGA 1782 0.3827 MWREAALLMVLLLLFLQICAAKYYQEHLCPPSSCGKITNIKEPFRLQGDPYKCGDERYELGCENNVTVLYLLSAKYHVEAINYENYTVRVVDPALQHHNCSSLPLHSLSRSNFSDTYTHRYFDQYQAGLGEYHNWESLNFEHIVFLNCKHSARENGKYVESGECVKWDSKGYAYAVGGDLKAEDLEVGCDVKLVAPTSLRSLNYDSYTAIHRGLAYGFEISWVNLACQNHCPFHGFCNFNSKSQNLEAWANKILFGWPFLIVIFILKWKKRHASRYENIENYLEQNHLVPIRYSYKEIKKMTEGFKEKLGKGGFGDVFKAKLRSGPFVAIKMLDKSKGNGQDFINEVATIGRIHHQNVVQLIGFCVSGSKRALVYEFMPNGSLDKFIFSSDGNTNFSYEKIYKISIGVARGIAYLHHGCEMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDNSVVTMTTGRGTIGYMAPELFYNNIGGISHKADVYSFGMLLMEMASKRKNLNPYAEHSSQLYFPLWIYNHIREEEDINIKDLSEEEKLIVKKMIIVALWCIQLKPNDRPSMNKVVEMLEGDIEDLEIPPKPILFPDEK 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7613g00002 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Vium7613g00002 593 SMART serkin_6 303 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7613g00002 593 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Vium7613g00002 593 Gene3D Transferase(Phosphotransferase) domain 1 378 581 - -
Vium7613g00002 593 Gene3D Phosphorylase Kinase; domain 1 277 377 - -
Vium7613g00002 593 FunFam PR5-like receptor kinase 378 585 - -
Vium7613g00002 593 PANTHER RUST RESISTANCE KINASE LR10-RELATED 269 586 IPR045874 GO:0004672
Vium7613g00002 593 SUPERFAMILY Protein kinase-like (PK-like) 287 574 IPR011009 -
Vium7613g00002 593 Pfam Protein kinase domain 306 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7613g00002 593 Pfam Wall-associated receptor kinase galacturonan-binding 29 92 IPR025287 GO:0030247
Vium7613g00002 593 ProSiteProfiles Protein kinase domain profile. 303 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7613g00002 593 FunFam serine/threonine-protein kinase PBS1-like 270 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7613g00002 Vium-Chr7613 42711 50670 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7613g00002 6 586 Receptor kinase-like Gene Family AT5G38260 35.621 3.11e-115 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium7613g00002 Pkinase 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7613g00002 - - vra:106763726 887.871