Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7606g00005 ATGTGTTTCAAACCACGCTGCGGCTTCTGCTACATCTTCCTCACACTTTACACCCTTATGTTCATGTTCATGTTTTCCTTTTTCCTCTTCTGGATAATCATATCTCCTTCAAGTGTCAAGTTCCACGTAACCGATGCCTCTCTAACACAGTTCAACCTCACCACAAGCAACAACACCTTGTATTACAACTTCAAGGTCAATGTCACAGTGAGAAATCCCAACAACAACATCATAGTGTACTATAGGAAGATCACAGCAATAGCTTGGTACAAAGATAATGCTTTTGGTTGGGTGAGCTTAACACCCTTTGACCAAGGCCACAAGAACACCACCTTCCTTCAAGCAGTGTTTGTAGGGCAGAGGGTGATTAAGCTCAAAGCTAAACAACTTGGTGAGTATAAAGAGGAGACAAATGCTGGGATTCACAAGGACTTAGCTGTGGATTTTGATCTTAATATCAGAGCCAAGTATGCAAGGTTCAAGAGTTCTCGTTTCAATCCACCCATTGTTCAGTGTCGTCGCTTAAGAGTTCCTTTGATTTCTAATGGCAAATCAGCATCTCCTTTTTCTGTCACCAGATGCAGCAGTGCCTATTTCTTTTCTGATCGTGATGCTGATGCATAG 624 0.4215 MCFKPRCGFCYIFLTLYTLMFMFMFSFFLFWIIISPSSVKFHVTDASLTQFNLTTSNNTLYYNFKVNVTVRNPNNNIIVYYRKITAIAWYKDNAFGWVSLTPFDQGHKNTTFLQAVFVGQRVIKLKAKQLGEYKEETNAGIHKDLAVDFDLNIRAKYARFKSSRFNPPIVQCRRLRVPLISNGKSASPFSVTRCSSAYFFSDRDADA 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7606g00005 207 Pfam Late embryogenesis abundant protein 67 162 IPR004864 -
Vium7606g00005 207 PANTHER OS05G0367900 PROTEIN 6 178 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7606g00005 Vium-Chr7606 21335 22278 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7606g00005 33 179 SNARE and Associated Proteins AT1G32270 31.293 6.30e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7606g00005 - - gmx:100784278 341.273