Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7606g00003 ATGTGTTGCAGAGACCGCTGCATACGTTGCATTTGCTGCACATTCATCACCCTCGTATTGCTGTTCATAGTTTCCTCAATCATCTTCTGGATAATCATCTCTCCATCAAACGTGAAGTTCCATGTAACTGATGCCTCCCTCACACAATTCAACCTCACAAACAACAACACCTTGTATTACAACTTCAAGGTCAACGTCACAATGAGAAACCCCAACAACAACATCGTAGTGTACTATAGGAGGATCAAAGCGATAGCTTGGTACAAAGACAATGATTTTGGTCGGGTAACCTTAACACCCTTTGACCAAGGCCACAAGAACACCACCGTCCTTCAGGTATTGTTTGAAGGGCAAAGTTTGCTTAAGCTCAGACGTCAACAACTTGGTGAGTATAAAGAAGAGACAAGTGTCGAGGTTTACAATGACATGGCTGTGGATTTTGATTTCAGAATCAGAGCCAAGTTTGGAAAGTTCAAGAGTAGTCGTTTCAATCCTCCCATCGTTCAGTGTCGGCGTTTGAGTGTTCCTTTGATTTCTAAGGGTAAATCATCACCTCCTTTTAGCGTCAGAAACTGTAGAGTTGGTCGTTCTTTCTTTGTTGATCGTGATGCTGAACCTGAATGA 624 0.4263 MCCRDRCIRCICCTFITLVLLFIVSSIIFWIIISPSNVKFHVTDASLTQFNLTNNNTLYYNFKVNVTMRNPNNNIVVYYRRIKAIAWYKDNDFGRVTLTPFDQGHKNTTVLQVLFEGQSLLKLRRQQLGEYKEETSVEVYNDMAVDFDFRIRAKFGKFKSSRFNPPIVQCRRLSVPLISKGKSSPPFSVRNCRVGRSFFVDRDAEPE 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7606g00003 207 PANTHER OS05G0367900 PROTEIN 7 176 IPR044839 GO:0098542
Vium7606g00003 207 Pfam Late embryogenesis abundant protein 65 160 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7606g00003 Vium-Chr7606 10635 11490 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7606g00003 32 151 SNARE and Associated Proteins AT1G32270 34.711 1.21e-20 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7606g00003 - - gmx:100783747 300.441