Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7606g00001 ATGCCATTGATTCGCACTACTCCACCGCTTCCTTATGCCATTTCCACACTCACTAAACTTACCAATGCATCTCTATCATCATCTTCCACTCTTTCTGCTGCCACATTCGGTTCCCACCTCCTGCGTAAAATTCAGAACCCAATTATTGGGTTTTCCGCAACCAGGAATCGCTCGCGTGCTGCGCTGATCAGAGCCAAAGCAGGGGCCGATTACTATTCCACCTTGAACGTTAGCCCCAGCGCTTCGCTGCAAGAAATCAAGGCCTCCTATCGCAAGCTGGCGCGCAAGTACCATCCAGATATGAACAAAAGCCCTGGGGCTGAGGAGAAGTTCAAAGAAATAAGTGCTGCATATGAGGTCCTGTCAGATGAGGAGAAAAGATCTTTATATGATCGTTTTGGTGAGTCAGGTCATCAAGAAGAAAATGGAGGGTCAAGTGGTGCTCCAGGGGTGGATCCTTTTGATTTATTTGATACATTCTTTGGTCGTTCTGATGGAATATTTAGAGAGGGTGATGCAGGGGGCATCAACTTCAATTTTGGTTACAAGAGAAACCATAGTCATGATATTCGATATGACCTTAATTTGAGCTTTGAAGAATCAATATTTGGAGCACAAAGGGAGATTGAAGTTTCCTGTTTTCAGACATGTGACACTTGTGATGGTACAGGAGCCAAATCAAAGAATTGCATTAAGCAATGCATAAATTGCGGTGGCAGAGGGGGAGAAATGAAAAGTCAGAGAACACCCTTTGGAATGATGTCTCAGGTTTCTACCTGCTCTAAGTGTAGTGGCCTTGGTAAAATAATCACAGATCACTGTCGAAGGTGTGATGGCAGTGGTCAGGTGCAATCCAAAGAAACAATCGAAGTGGACATTCCTGCTGGAGTCAATGATGGAGACACAATGCAAATTCAAGGACAAGGGAATTTTGATAAAAAGAGGCAAATTACTGGGGATCTTTTTGTTGTCCTGCATGTGGATGAAAAGCAAGGAATTTGGAGAGAGGGTCTTCATTTGTACTCAAAGATTAACATTGACTTCACAGATGCAATATTGGGGTCAGTTAAAAAGGTAATATCAATTACCCTCTTTGCGCTCGTAAGAAAAATAAATTTGTTGGGGCAAAATTGA 1134 0.4303 MPLIRTTPPLPYAISTLTKLTNASLSSSSTLSAATFGSHLLRKIQNPIIGFSATRNRSRAALIRAKAGADYYSTLNVSPSASLQEIKASYRKLARKYHPDMNKSPGAEEKFKEISAAYEVLSDEEKRSLYDRFGESGHQEENGGSSGAPGVDPFDLFDTFFGRSDGIFREGDAGGINFNFGYKRNHSHDIRYDLNLSFEESIFGAQREIEVSCFQTCDTCDGTGAKSKNCIKQCINCGGRGGEMKSQRTPFGMMSQVSTCSKCSGLGKIITDHCRRCDGSGQVQSKETIEVDIPAGVNDGDTMQIQGQGNFDKKRQITGDLFVVLHVDEKQGIWREGLHLYSKINIDFTDAILGSVKKVISITLFALVRKINLLGQN 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7606g00001 377 SMART dnaj_3 69 126 IPR001623 -
Vium7606g00001 377 Pfam DnaJ C terminal domain 190 359 IPR002939 -
Vium7606g00001 377 FunFam Molecular chaperone DnaJ 209 286 - -
Vium7606g00001 377 Pfam DnaJ central domain 217 281 IPR001305 GO:0031072|GO:0051082
Vium7606g00001 377 SUPERFAMILY HSP40/DnaJ peptide-binding domain 189 327 IPR008971 GO:0006457|GO:0051082
Vium7606g00001 377 Pfam DnaJ domain 70 131 IPR001623 -
Vium7606g00001 377 SUPERFAMILY Chaperone J-domain 69 171 IPR036869 -
Vium7606g00001 377 Gene3D DnaJ domain 67 170 IPR036869 -
Vium7606g00001 377 ProSiteProfiles dnaJ domain profile. 70 134 IPR001623 -
Vium7606g00001 377 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 35 360 - -
Vium7606g00001 377 PRINTS DnaJ domain signature 106 126 IPR001623 -
Vium7606g00001 377 PRINTS DnaJ domain signature 72 90 IPR001623 -
Vium7606g00001 377 PRINTS DnaJ domain signature 90 105 IPR001623 -
Vium7606g00001 377 PRINTS DnaJ domain signature 126 145 IPR001623 -
Vium7606g00001 377 FunFam Chaperone protein dnaJ A6 chloroplastic 67 173 - -
Vium7606g00001 377 ProSiteProfiles Zinc finger CR-type profile. 204 286 IPR001305 GO:0031072|GO:0051082
Vium7606g00001 377 ProSitePatterns Nt-dnaJ domain signature. 111 130 IPR018253 -
Vium7606g00001 377 CDD DnaJ_zf 217 281 IPR001305 GO:0031072|GO:0051082
Vium7606g00001 377 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 204 284 IPR036410 -
Vium7606g00001 377 CDD DnaJ_C 189 359 - -
Vium7606g00001 377 CDD DnaJ 70 123 IPR001623 -
Vium7606g00001 377 Gene3D - 217 281 - -
Vium7606g00001 377 Gene3D - 188 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7606g00001 Vium-Chr7606 268 6647 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7606g00001 71 131 C2H2 Transcription Factor Family AT1G74250 43.284 5.18e-08 52.8