Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7601g00002 ATGGTGCAAACAAGGAAGTTCCGAGGTGTCAGGCAGCGCCATTGGGGTTCTTGGGTATCGGAAATTCGCCACCCACTTCTCAAAAGGAGGGTGTGGCTGGGTACGTTTGAAACAGCAGAAGAAGCAGCACGAGCATACGATCAAGCTGCGATTCTGATGAGTGGACGAAACGCTAAAACGAATTTTCCAATGCTTCAAACACCAGAGGGTGACCCAAAGACGCTAACAGCCACGCACGAAACCCCATCAACCTCAAAGGAACTGGAAGAGATTCTTCACGCAAAGCTTCGAAAGTGTGGGAAGCTTCCTTCACCTTCCATGACTTGCTTGAGACTGGACCCAGAGAACTCCCACATCGGCGTGTGGCAGAAGCGCGCCGGTCACTGTTCTGACTCCAACTGGGTAATGATGGTTCCCTTTGGAAAGAAGGGTGATGAAGGTGGAAACAGTTCTACGAGTGGTGCTTCGTTTGATTCGTTTTCTGAGTGTGATCAGACGGTGCAAGTCAGACGACAGGAACATGTGAGAACAGAGATGGACGAGGAAGAGAGAATCGCTATGCAGATGATAGAAGAACTCCTCAGCAGAAACTGGCCCACTAGCCCTTCTTCATGTAATAATAACATCTGTTAA 633 0.4929 MVQTRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPMLQTPEGDPKTLTATHETPSTSKELEEILHAKLRKCGKLPSPSMTCLRLDPENSHIGVWQKRAGHCSDSNWVMMVPFGKKGDEGGNSSTSGASFDSFSECDQTVQVRRQEHVRTEMDEEERIAMQMIEELLSRNWPTSPSSCNNNIC 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7601g00002 210 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Vium7601g00002 210 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 161 - -
Vium7601g00002 210 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Vium7601g00002 210 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Vium7601g00002 210 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Vium7601g00002 210 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Vium7601g00002 210 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Vium7601g00002 210 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Vium7601g00002 210 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Vium7601g00002 210 CDD AP2 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7601g00002 Vium-Chr7601 27496 28487 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7601g00002 1 197 AP2-EREBP Transcription Factor Family AT1G15360 60.294 8.21e-72 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium7601g00002 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7601g00002 - - gmx:100779921 327.405