Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7601g00001 ATGACTGGAGGATTTTATGATCACCGAAGATCAAGATTAAGGTTTATGAATATCATTACGCAGAATAAAGGCACTATTCGCATTAGAGAGGAGGAATTGGAGAAAGTTAGATTTAATCTACAGGAGATAGACCAAAAGATTAATGAACTTGTGGCTGAGCAGCAGAAGATTGATGCCAAGCGTGCTCATGACAAATCTGAGATAGAACAGCTTAAGCAAGATATTGCTAATGCTAATAAGCAGAAGCAGTTGATTTCTAAAGCACTTACAAAAAAGGAGAAGTCTGTTGGGGATGTCCAGAACCAGATTGAACAGCTTAAGGCTAGTATCGCAACAAAAAATGCTGAGATGGGCACTGAGCTAATTGATCATTTAACACCAGAGGAAAAGAAACTCTTGTCAGATTTGAACCCTGAAATCAAAGACCTTAAAGAGAAGCTTGTTGCTTGCAAGACTGACCGTATTGAGACTGAAGCAAGGAAAGCAGAACTGGATACCAATCTTACTACTAACCTTAGGAGAAGGAAACAAGAGCTGGAGGCTGTAATATCGGCCGTGGATTCTGACTCTCTGGTTGGTGAGGCTGAATCCAAGGGGCAGGAGCTTAGTGATGCTAAAATGTTGGTTGATGACTTAACAGAGCAGCTTAGAAGAGTTGCTGAAAATATAAATGATCGAATGAGGCAAATTACAAAGATTAAAGATGAATTGAATAAATTGAAGTCTTTGGAGGACGAATATGAAAAGAAACTTCAGGAAGAAGCAAAAGAATTAGAGCAATTGCTGAGTAAAAAAAATACATATGCAGCTAAAGAAGAAGAGTATGCCAAGAAAATTAGGGAACTGGGACCATTGACATCAGATGCTTTTGAGGCGTATAGACGAAGGAATATAAAAGATTTGCACAAAATGCTGCACAGGTGCAATGAGCAATTGCAGCAGTTCAGTCATGTAAACAAGAAAGCACTGGACCAGTATATAAATTTTACAGAACAACGAGAAGAACTTCAGAAAAGACAGGCCGAACTTGATGCAGGAGATGAGAAAATTAGGGAGCTGATATCAGTGCTAGATCAGCGGAAGGACGAATCTATAGAACGCACTTTCAAAGGTGTTGCTAGGCATTTTCGGGAAGTATTTTCTGAACTTGTGCAGGGTGGCCATGGTCATCTGGTTATGATGAAAAAGAAGGATGGTGATCATGATGACGATGAAGATGAGGATGGTCCTCGTGAAGCAAATCCAGAGGGGAGAGTAGAAAAATACATTGGAGTGAAAGTGAAGGTCTCATTTACTGGACAAGGGGAAACACAGTCCATGAAACAGTTGTCTGGGGGTCAAAAAACTGTTGTTGCCCTTACTCTTATCTTTGCCATACAGCGATGTGATCCTGCTCCCTTTTATCTATTTGATGAGATTGATGCAGCTCTGGACCCACAGTACAGAACTGCTGTTGGAAATATGATTCGTCGCTTGGCTGACGTAGCAAACACTCAATTTATCACAACAACATTTCGCCCAGAGCTAGTGAAAGTTGCTGACAAAATATACGGTGTAACACATAAAAACAGGGTCAGTCGTGTTAATGTTGTATCCAAAGAAGATGCATTGGAATTTATTGAGCATGACCAGACGCACAATGCTGAATAA 1650 0.4024 MTGGFYDHRRSRLRFMNIITQNKGTIRIREEELEKVRFNLQEIDQKINELVAEQQKIDAKRAHDKSEIEQLKQDIANANKQKQLISKALTKKEKSVGDVQNQIEQLKASIATKNAEMGTELIDHLTPEEKKLLSDLNPEIKDLKEKLVACKTDRIETEARKAELDTNLTTNLRRRKQELEAVISAVDSDSLVGEAESKGQELSDAKMLVDDLTEQLRRVAENINDRMRQITKIKDELNKLKSLEDEYEKKLQEEAKELEQLLSKKNTYAAKEEEYAKKIRELGPLTSDAFEAYRRRNIKDLHKMLHRCNEQLQQFSHVNKKALDQYINFTEQREELQKRQAELDAGDEKIRELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDHDDDEDEDGPREANPEGRVEKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADVANTQFITTTFRPELVKVADKIYGVTHKNRVSRVNVVSKEDALEFIEHDQTHNAE 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7601g00001 549 Pfam RecF/RecN/SMC N terminal domain 93 525 IPR003395 -
Vium7601g00001 549 Gene3D - 28 188 - -
Vium7601g00001 549 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 1 542 - -
Vium7601g00001 549 Coils Coil 33 116 - -
Vium7601g00001 549 Coils Coil 202 271 - -
Vium7601g00001 549 Gene3D - 331 541 IPR027417 -
Vium7601g00001 549 Coils Coil 319 339 - -
Vium7601g00001 549 Coils Coil 140 160 - -
Vium7601g00001 549 MobiDBLite consensus disorder prediction 393 417 - -
Vium7601g00001 549 FunFam Structural maintenance of chromosomes 3 331 541 - -
Vium7601g00001 549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 537 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7601g00001 Vium-Chr7601 7034 12999 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7601g00001 185 509 Structural Maintenance of Chromosomes family AT5G15920 22.619 3.10e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7601g00001 K06669 - gmx:100810448 959.518