LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium7584g00002	ATGGTCAGTTGTAAACCTCAACATTTTCTGCTTGCTTTGAGTTTCTGCTGGTGGACAACTTGTATCCACGTTAGCTCTGAAAAGCACAGTCTGAAACCTGGAGAAAAACTGAACAGCACCACCCTGTTACGTTCTGAAAAAGGTTATTATTTTATTAAGATTGTAACAAGTTACTTGCAGATCTATGGCCCCAAAAATGAGAATTGGACAGTGTGGATTGGTAATAGAAATCAACCTGTTGACACGGGTTCTGCAGTTCTGCTGCTAAACCACTCTGGTGTACTGAAAATAGAATCCAAAGATATTGAACCCATCATCCTTTACTCTTCACCACAACCTTCCGAAAACACTGTGGCCACCTTGTTGGACACGGGCAACTTTGTACTGCAACAACTTCACCCCAATGGAACAAACACAACGCTGTGGCAAAGTTTTGATTACCCTACTGATAATTTGCTCCCTGGGATGAAGTTAGGCGTCCATCACAGGAGTGGCCATAAATGGTCACTAGTTTCGTGGTTGACTAATTTGGAACCAAGTCTTGGGGCATTTGAACTTGAATGGGAACCCACTAAAACGGAATTGATCATCAAGCGAAGAGGAAAACTGTGTTGGGCAAGTGGAAATCTGGGAAACGGTAGACTCATGCAAGGCACATCTTACGAGATTGTCTCAAACGAAAACGAAAGCTACTTCTCAATCACAACTTTCAATGGAGAGCTTACAAGATGGGTGCTTTTAGAAACTGGGCAGCTGATAAATCGGAATGGAGCGGATAATAATGTTGCGAGGGCTGATCTGTGCTATGGCTACAACACAGATAAAGGGTGCCAACGATGGGAGGATATACCCTTATGCAGGCATCCTGGTGATGCATTTGACAGCAGGGAAGGGTACCCCAATGCAGACATGGCAAACAATCTAGAAAATTCGAGTTATGGGCTAAGTGATTGTCAGGATATGTGCTGGAGAAACTGCAATTGTGCTGGATTCAAAAACTATTATGATGATGGTGGAACTGGTTGTGTATTCTATCACAAGAACTTCACCACGGGTACTAATTTTGCAAGTGGGGGCTCTAAATTCTTCGTACTTGTAAACAAACCCCATCACAAAGGTAAAAAAATGTGGATATGGATAACTGTTGTATCAGTAGTAGCTGCTCTGTTAGTAATCTCTGCAATTACTCTTGCCATAAAGAAAAGAAAACGTCGTCTTGAAGGGAAAAAAAGAAAAGGGGTGGAGACTAAGAATATGGCAGATTTAGCAGCATCAAATAGATTCTATGATGTCAAAGACTTTGACGATGAATTAAAGATCAGACAAAATCTAAAAGTGTTTCCATTTACAATGGTATTGTGGGCAACAGAAGATTTTAATCCTGAAAACAAATTAGGTGAAGGAGGATTTGGACCTGTTTATAAGGGAATCCTTCCTTCTGGGCAAGAAGTAGCCATAAAAAGACTTTCAAAATCATCAAGACAAGGAATTGTGGAATTTGAAAATGAACTGGTGCTTATATGTGAACTTCAGCACACCAATCTTGTACAACTACTTGGATATTGTATTCACGAAGAGGAAAGGATTTTAATTTATGAGTTCATGTCAAACAAAAGCTTGGACTACTATCTATTTGATTGTGACAGAGGCAAGATTTTGGATTGGACGAAGCGCTTCAATATAATAGGAGGAATCTCTCAAGGATTACTCTATCTTCATAAGTACTCGAGACTAAAAATAATTCATAGAGACTTGAAAGCCAGTAATATACTTCTTGATGAAAATATGAATCCAAAAATTTCTGATTTTGGATTGGCAAGAATGTTTACACAGGAAGAGTCCATAACAAATACTATGGTTACATGTCTCCTGAATATGCCATGGAAGGAATTTTTTCTACAAAATCTGACGTCTACAGCTTTGGAGTGTTGCTACTTGAAATCGTTAGTGGAAGAAGAAATACTAGCTTATATGATGTTGATCAACCTCTTAATCTAA	1998	0.3929	MVSCKPQHFLLALSFCWWTTCIHVSSEKHSLKPGEKLNSTTLLRSEKGYYFIKIVTSYLQIYGPKNENWTVWIGNRNQPVDTGSAVLLLNHSGVLKIESKDIEPIILYSSPQPSENTVATLLDTGNFVLQQLHPNGTNTTLWQSFDYPTDNLLPGMKLGVHHRSGHKWSLVSWLTNLEPSLGAFELEWEPTKTELIIKRRGKLCWASGNLGNGRLMQGTSYEIVSNENESYFSITTFNGELTRWVLLETGQLINRNGADNNVARADLCYGYNTDKGCQRWEDIPLCRHPGDAFDSREGYPNADMANNLENSSYGLSDCQDMCWRNCNCAGFKNYYDDGGTGCVFYHKNFTTGTNFASGGSKFFVLVNKPHHKGKKMWIWITVVSVVAALLVISAITLAIKKRKRRLEGKKRKGVETKNMADLAASNRFYDVKDFDDELKIRQNLKVFPFTMVLWATEDFNPENKLGEGGFGPVYKGILPSGQEVAIKRLSKSSRQGIVEFENELVLICELQHTNLVQLLGYCIHEEERILIYEFMSNKSLDYYLFDCDRGKILDWTKRFNIIGGISQGLLYLHKYSRLKIIHRDLKASNILLDENMNPKISDFGLARMFTQEESITNTMVTCLLNMPWKEFFLQNLTSTALECCYLKSLVEEEILAYMMLINLLI	665

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium7584g00002	665	SMART	serkin_6	459	665	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium7584g00002	665	ProSiteProfiles	Bulb-type lectin domain profile.	28	142	IPR001480	-
	Vium7584g00002	665	Gene3D	Transferase(Phosphotransferase) domain 1	535	634	-	-
	Vium7584g00002	665	Gene3D	-	22	145	IPR036426	-
	Vium7584g00002	665	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	123	626	-	-
	Vium7584g00002	665	FunFam	Os07g0541700 protein	535	622	-	-
	Vium7584g00002	665	Pfam	PAN-like domain	291	349	IPR003609	-
	Vium7584g00002	665	CDD	PAN_AP_plant	306	366	-	-
	Vium7584g00002	665	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	580	592	IPR008271	GO:0004672\|GO:0006468
	Vium7584g00002	665	Pfam	Protein kinase domain	461	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium7584g00002	665	ProSiteProfiles	Protein kinase domain profile.	459	665	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium7584g00002	665	SUPERFAMILY	Protein kinase-like (PK-like)	439	620	IPR011009	-
	Vium7584g00002	665	ProSiteProfiles	PAN/Apple domain profile.	286	367	IPR003609	-
	Vium7584g00002	665	SUPERFAMILY	alpha-D-mannose-specific plant lectins	69	176	IPR036426	-
	Vium7584g00002	665	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	422	534	-	-
	Vium7584g00002	665	Pfam	D-mannose binding lectin	70	173	IPR001480	-
	Vium7584g00002	665	SMART	blect_4	28	148	IPR001480	-
	Vium7584g00002	665	Gene3D	Phosphorylase Kinase; domain 1	417	534	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium7584g00002	Vium-Chr7584	2079	4923	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium7584g00002	378	618	Receptor kinase-like Gene Family	AT4G23190	50.207	6.39e-69	234

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vium7584g00002		Pkinase	1.4e-33	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium7584g00002	-		-	vum:124845464	991.875