Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7584g00001 ATGGTCAGTTGTAAACCTCAACATTTTCTGCTTGCTTTGAGTTTCTGCTGGTGGACAACTTGTATCCACGTTAGCTCTGAAAAGCACAGTCTGAAACCTGGAGAAAAACTGAACAGCACCACCCTGTTACGTTCTGAAAAAGGTTATTATTTTATTAAGATTGTAACAAGTTACTTGCAGATCTATGGCCCCAAAAATGAGAATTGGACAGTGTGGATTGGTAATAGAAATCAACCTGTTGACACGGGTTCTGCAGTTCTGCTGCTAAACCACTCTGGTGTACTGAAAATAGAATCCAAAGATATTGAACCCATCATCCTTTACTCTTCACCACAACCTTCCGAAAACACTGTGGCCACCTTGTTGGACACGGGCAACTTTGTACTGCAACAACTTCACCCCAATGGAACAAACACAACGCTGTGGCAAAGTTTTGATTACCCTACTGATAATTTGCTCCCTGGGATGAAGTTAGGCGTCCATCACAGGAGTGGCCATAAATGGTCACTAGTTTCGTGGTTGACTAATTTGGAACCAAGTCTTGGGGCATTTGAACTTGAATGGGAACCCACTAAAACGGAATTGATCATCAAGCGAAGAGGAAAACTGTGTTGGGCAAGTGGAAATCTGGGAAACGGTAGACTCATGCAAGGCACATCTTACGAGATTGTCTCAAACGAAAACGAAAGCTACTTCTCAATCACAACTTTCAATGGAGAGCTTACAAGATGGGTGCTTTTAGAAACTGGGCAGCTGATAAATCGGAATGGAGCGGATAATAATGTTGCGAGGGCTGATCTGTGCTATGGCTACAACACAGATAAAGGGTGCCAACGATGGGAGGATATACCCTTATGCAGGCATCCTGGTGATGCATTTGACAGCAGGGAAGGGTACCCCAATGCAGACATGGCAAACAATCTAGAAAATTCGAGTTATGGGCTAAGTGATTGTCAGGATATGTGCTGGAGAAACTGCAATTGTGCTGGATTCAAAAACTATTATGATGATGGTGGAACTGGTTGTGTATTCTATCACAAGAACTTCACCACGGGTACTAATTTTGCAAGTGGGGGCTCTAAATTCTTCGTACTTGTAAACAAACCCCATCACAAAGGTAAAAAAATGTGGATATGGATAACTGTTGTATCAGTAGTAGCTGCTCTGTTAGTAATCTCTGCAATTACTCTTGCCATAAAGAAAAGAAAACGTCGTCTTGAAGGGAAAAAAAGAAAAGGGGTGGAGACTAAGAATATGGCAGATTTAGCAGCATCAAATAGATTCTATGATGTCAAAGACTTTGACGATGAATTAAAGATCAGACAAAATCTAAAAGTGTTTCCATTTACAATGGTATTGTGGGCAACAGAAGATTTTAATCCTGAAAACAAATTAGGTGAAGGAGGATTTGGACCTGTTTATAAGGGAATCCTTCCTTCTGGGCAAGAAGTAGCCATAAAAAGACTTTCAAAATCATCAAGACAAGGAATTGTGGAATTTGAAAATGAACTGGTGCTTATATGTGAACTTCAGCACACCAATCTTGTACAACTACTTGGATATTGTATTCACGAAGAGGAAAGGATTTTAATTTATGAGTTCATGTCAAACAAAAGCTTGGACTACTATCTATTTGATTGTGACAGAGGCAAGATTTTGGATTGGACGAAGCGCTTCAATATAATAGGAGGAATCTCTCAAGGATTACTCTATCTTCATAAGTACTCGAGACTAAAAATAATTCATAGAGACTTGAAAGCCAGTAATATACTTCTTGATGAAAATATGAATCCAAAAATTTCTGATTTTGGATTGGCAAGAATGTTTACACAGGAAGAGTCCATAACAAATACTAGTAGGATTGTTGGAACCTATGGTTACATGTCTCCTGAATATGCCATGGAAGGAATTTTTTCTACAAAATCTGACGTCTACAGCTTTGGAGTGTTGCTACTTGAAATCGTTAGTGGAAGAAGAAATACTAGCTTATATGATGTTGATCAACCTCTTAATCTAATAGGACATGCATGGGAGTTATGGAAAGAAAGTGCAGTTCACCAATTAGTAGATCCATCATTGAGTGAGTCCTTTGATCTTGAAGAAATGAAAAGATGCATTCATGTGGGTCTCTTATGCGTGTCACAATATGCAAAAGACCGACCAACAATGTCTGATGTTATATCAATGTTAACAAAAGAAAGTTCAATAGTTACCTTGCCTCAAAGACCTGCTTTCTATTTGGAAAGAGATTACTCTTATAAGGAAGTATCTTATGAAGAGTTAAATACTGACTCTATGGAAGAAATTACTACTTCCTCTTGA 2322 0.3885 MVSCKPQHFLLALSFCWWTTCIHVSSEKHSLKPGEKLNSTTLLRSEKGYYFIKIVTSYLQIYGPKNENWTVWIGNRNQPVDTGSAVLLLNHSGVLKIESKDIEPIILYSSPQPSENTVATLLDTGNFVLQQLHPNGTNTTLWQSFDYPTDNLLPGMKLGVHHRSGHKWSLVSWLTNLEPSLGAFELEWEPTKTELIIKRRGKLCWASGNLGNGRLMQGTSYEIVSNENESYFSITTFNGELTRWVLLETGQLINRNGADNNVARADLCYGYNTDKGCQRWEDIPLCRHPGDAFDSREGYPNADMANNLENSSYGLSDCQDMCWRNCNCAGFKNYYDDGGTGCVFYHKNFTTGTNFASGGSKFFVLVNKPHHKGKKMWIWITVVSVVAALLVISAITLAIKKRKRRLEGKKRKGVETKNMADLAASNRFYDVKDFDDELKIRQNLKVFPFTMVLWATEDFNPENKLGEGGFGPVYKGILPSGQEVAIKRLSKSSRQGIVEFENELVLICELQHTNLVQLLGYCIHEEERILIYEFMSNKSLDYYLFDCDRGKILDWTKRFNIIGGISQGLLYLHKYSRLKIIHRDLKASNILLDENMNPKISDFGLARMFTQEESITNTSRIVGTYGYMSPEYAMEGIFSTKSDVYSFGVLLLEIVSGRRNTSLYDVDQPLNLIGHAWELWKESAVHQLVDPSLSESFDLEEMKRCIHVGLLCVSQYAKDRPTMSDVISMLTKESSIVTLPQRPAFYLERDYSYKEVSYEELNTDSMEEITTSS 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7584g00001 773 CDD STKc_IRAK 465 732 - -
Vium7584g00001 773 ProSiteProfiles Bulb-type lectin domain profile. 28 142 IPR001480 -
Vium7584g00001 773 Pfam Protein tyrosine and serine/threonine kinase 462 729 IPR001245 GO:0004672|GO:0006468
Vium7584g00001 773 CDD PAN_AP_plant 306 366 - -
Vium7584g00001 773 SUPERFAMILY Protein kinase-like (PK-like) 443 751 IPR011009 -
Vium7584g00001 773 SMART serkin_6 459 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7584g00001 773 ProSitePatterns Serine/Threonine protein kinases active-site signature. 580 592 IPR008271 GO:0004672|GO:0006468
Vium7584g00001 773 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 123 755 - -
Vium7584g00001 773 Gene3D Transferase(Phosphotransferase) domain 1 535 739 - -
Vium7584g00001 773 PIRSF SRK 2 267 IPR024171 GO:0004674
Vium7584g00001 773 PIRSF SRK 261 773 IPR024171 GO:0004674
Vium7584g00001 773 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 176 IPR036426 -
Vium7584g00001 773 Pfam D-mannose binding lectin 70 173 IPR001480 -
Vium7584g00001 773 Gene3D Phosphorylase Kinase; domain 1 419 534 - -
Vium7584g00001 773 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 422 534 - -
Vium7584g00001 773 ProSiteProfiles PAN/Apple domain profile. 286 367 IPR003609 -
Vium7584g00001 773 Pfam PAN-like domain 291 349 IPR003609 -
Vium7584g00001 773 Gene3D - 28 146 IPR036426 -
Vium7584g00001 773 ProSiteProfiles Protein kinase domain profile. 459 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7584g00001 773 SMART blect_4 28 148 IPR001480 -
Vium7584g00001 773 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 535 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7584g00001 Vium-Chr7584 1487 4923 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7584g00001 436 766 Receptor kinase-like Gene Family AT4G11530 55.255 1.07e-122 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium7584g00001 PK_Tyr_Ser-Thr 4.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7584g00001 - - gmx:100820258 1079.32