LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium7582g00001	CTACTTGTGGCAGAATTGCGGACCGCTATATTTTCTAAGGTTGCACTGCGAACAATTCGATTAGTATCAAGGAAGGTCTTCTCACATTTGCATGACCTTGACCTTCGGTATCATCTAAGCCGAGAAACGGGTGCATTAAGTAGAATAATTGATCGTGGTAGTCGTGGAATAAATTTCATTCTCTACTCTATGGTGTTCAATGTGGTACCTACCATGATAGAGATATCTATGGTAGCAGGTATACTGGCCTACAAATTTGGAGCTCCCTTTGCGCTTATTACTTCCTTATCAGTTGCTGCTTATGTTATTTTCACTCTGTCTATCACACAGTGGAGGACTAAGTTCAGGAAAGCCATGAATAGGGCTGATAATGATGCTAGTACGAGGGTTATTGATTCACTTATTAATTATGAGACTGTCAAATATTTTAATAATGAAGTTTATGAAGCTGATAATTATGACAAGTACCTAAAGAGATATGAAGATGCTGCTCTGAAAACCCAACGAAGTCTGGCCGTCTTGAATTTTGGTCAAAATATTATATTTAGTACTGCTCTTTCATCAGCAATGGTGCTGTGCTCTCATGGGATCATGGATGGAACGCTGACTGTTGGTGATTTGGTAATGGTGAATGGGCTTCTCTTCCAATTATCTCTTCCACTCAATTTCCTTGGTAGTGTTTATCGTGAGACTATACAGAGTTTAGTTGACATGAAATCCATGTTTCAGTTACTCGAGGAAAGAGCAGACGTTAGGGATAAAGAAAATGCACAGCCTCTTAGATATAATGGGGGGAGTATCAAATTTGAGAATGTACATTTTAGTTACCTCACAGAAAGAAAGATACTAGATGGAATATCGTTTGTTGTGCCAGCTGGTAAAAGTGTTGCAATTGTTGGGACTAGTGGAAGTGGAAAATCAACCATTCTTAGATTGCTATTCAGGTTCTTTGATCCTAATTCTGGAAGTATAAAGATAGATAATCAAGATATTCGGGAGGTAACCCTTGAGAGTTTGCGGAAGTCCATTGGTGTTGTTCCACAAGATACTGTACTTTTTAATGATACTATATTTCACAACATTCACTATGGTCGCTTCTGCACAGAAGAGGAGGTCTATGAAGCTGCTCAACAAGCAGCAATTCATAACACTATCATGAATTTTCCTGATAAATACCAAACTGTTGTCGGAGAGCGAGGGCTCAAGTTAAGTGGTGGTGAGAAGCAACGTGTTGCCCTTGGCTCGTTCATTCTTAAAAGCGCCTGCATTCTGTGA	1275	0.3945	LLVAELRTAIFSKVALRTIRLVSRKVFSHLHDLDLRYHLSRETGALSRIIDRGSRGINFILYSMVFNVVPTMIEISMVAGILAYKFGAPFALITSLSVAAYVIFTLSITQWRTKFRKAMNRADNDASTRVIDSLINYETVKYFNNEVYEADNYDKYLKRYEDAALKTQRSLAVLNFGQNIIFSTALSSAMVLCSHGIMDGTLTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLVDMKSMFQLLEERADVRDKENAQPLRYNGGSIKFENVHFSYLTERKILDGISFVVPAGKSVAIVGTSGSGKSTILRLLFRFFDPNSGSIKIDNQDIREVTLESLRKSIGVVPQDTVLFNDTIFHNIHYGRFXCTEEEVYEAAQQAAIHNTIMNFPDKYQTVVGERGLKLSGGEKQRVALGSFILKSACIL	425

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium7582g00001	425	ProSitePatterns	ABC transporters family signature.	404	418	IPR017871	GO:0005524\|GO:0016887
	Vium7582g00001	425	Gene3D	-	261	425	IPR027417	-
	Vium7582g00001	425	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY B	2	425	IPR039421	-
	Vium7582g00001	425	Pfam	ABC transporter	283	425	IPR003439	GO:0005524
	Vium7582g00001	425	CDD	ABC_6TM_ATM1_ABCB7	5	241	-	-
	Vium7582g00001	425	SUPERFAMILY	ABC transporter transmembrane region	4	246	IPR036640	GO:0005524\|GO:0016020
	Vium7582g00001	425	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	256	425	IPR027417	-
	Vium7582g00001	425	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	1	233	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Vium7582g00001	425	Gene3D	ABC transporter type 1, transmembrane domain	1	257	IPR036640	GO:0005524\|GO:0016020
	Vium7582g00001	425	Pfam	ABC transporter transmembrane region	3	220	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium7582g00001	Vium-Chr7582	1571	14346	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium7582g00001	113	425	Calmodulin-binding Proteins	AT2G36910	33.435	1.27e-45	167

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium7582g00001	K05662		-	gmx:100779975	755.747