Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium757g00001 ATGAGTGTAAAACTCATCTGGGTATTCTTCAATGCCATCTTTTTGTTTCTTCTAGTGGCCAATTCAGAAGAAGAAGGGACGATCAAGGCCCTGGTCACATTCATGGATAAATTGGCACCAGGGTATGTACCAACAGACCCTTCGTGGGGTTGGAACCTTTCGTCAGATCCCTGCATTGATAAGTGGTACGGTGTGAAGTGCCATTCAGATAACAAATACGTTATGAGTGTGACTCTTGAGAAGTTCAATTTTGGTGGAGGTTTTGACGCCGGTTCTCTTTGCATTACAAAGTCTCTTCAAATGCTTAGCCTGAAGGACAACGATTTACATGATTCGATACCAGAGGATATAGGAAACTGCAAGTCATTGACTCACTTGTTTTTAAGTGGGAACCAATTCTCTGGGGACCTTCCTATTTCTATTGGCAATCTAAGTAACATAATACGGCTTCATATTTCGGATAACAAGTTAACTGGAGAGCTACCTAAAATGGTTCATGTTTCAAGTTTGATATCCTTCGTTGCTCAAAACAACAACTTCACTGGGGAGATTCCTAGTTTTGACTTCTCCAACCTTAAAGACTTTAATGTCTCTAATAACAATTTACATGGTCCAGTTCCTGATGTCGGAGGTAAATTCCATGCAGACAGCTTTACTGGGAATCCTAACTTATGTGGGGAGCCACTTTCAAATGCATGTTACTTAGTCCTTGGTTTGATTACGCTGATTTTCTTGACCTTTAAACTGTTATGCAAGATCAAGACTAAAGAAAAAGTGTTGGATGTTGAAAAGAAGGAAAAGGCAGAAGAAAGTGTTGGTGTTGTTGGCATGGCTAGTGAAATATCCCATTCCAATGGATCAAAGAAGTACATTGGGATCAGATCGGAGTATTCATTGACATCTTTGGAAAGTGGGATGACAACATCAGGTCTTGTTCTTCTTTCAAGTCGAACCCTTAGAGGATTGCAATTTGAGGACTTGCTTGGTGCTCCTGCCGAATTGATTAGAAGGGGAAAGCATGGAAGCCTCTACAAGGTTATGCTCGATAATGGGGTGCAGTTGGCAGTGAAGAGGATTAAGGATTGGGGGATTTCTAAGCAAGATTTTCAGACAAGGATGAATTTGATAGCCCAAGCCAAGCATCCACGCGTATTGCCACCTGTTGCATATTATTGTTCTCAGCAAGAGAAGCTCCTAGCATATGAATATATGCAGAATGGTAGTCTCTTCATGTTGCTCTATGCTGGATCTGAAAGTGGCCTCACGTTTGACTGGGGAAGAAGACTAAATGTTGCTGCTAAGATAGTTTCGGCTTTGACATATATGCATGAGGAGTTTGTTGATAATGGAATAGCACATGGTAACTTAAAGTCAAATAACATTTTGTTTGACAAGAATATGGATCCATGCATAAGCGAATATGGCTTAATGATGGCAGAAAATTATGATGAGTTTGTCATTTCGCATAACAAAGGCATCAAAAGCAAAGATCTAATTGCAGCCACCTTCAAAGCTGATGTGTATGCCTTGGGTATGATACTTCTGGAGCTGTTGACAGGGAAAGTGATTAAAAATGATGGATTTGATCTAGTTAAATGGGTGGATTCAGTGGTCAGAGAGGAATGGACCATTGAAGTTTTTGACAAGTCCCTAATCTCACAGGGTGCTTCGGAAGAGAGGATGATGAATCTGTTGCAGGTAGCATTAAAATGCTTAAATCCATCTCCAAATGACAGGCCAAGCATGAGCCAAGTTGCAGTGATGACAAATGCTTTGATAGAGGAGGAAGAAAAATCCATATCCTTTGACACATGA 1815 0.4061 MSVKLIWVFFNAIFLFLLVANSEEEGTIKALVTFMDKLAPGYVPTDPSWGWNLSSDPCIDKWYGVKCHSDNKYVMSVTLEKFNFGGGFDAGSLCITKSLQMLSLKDNDLHDSIPEDIGNCKSLTHLFLSGNQFSGDLPISIGNLSNIIRLHISDNKLTGELPKMVHVSSLISFVAQNNNFTGEIPSFDFSNLKDFNVSNNNLHGPVPDVGGKFHADSFTGNPNLCGEPLSNACYLVLGLITLIFLTFKLLCKIKTKEKVLDVEKKEKAEESVGVVGMASEISHSNGSKKYIGIRSEYSLTSLESGMTTSGLVLLSSRTLRGLQFEDLLGAPAELIRRGKHGSLYKVMLDNGVQLAVKRIKDWGISKQDFQTRMNLIAQAKHPRVLPPVAYYCSQQEKLLAYEYMQNGSLFMLLYAGSESGLTFDWGRRLNVAAKIVSALTYMHEEFVDNGIAHGNLKSNNILFDKNMDPCISEYGLMMAENYDEFVISHNKGIKSKDLIAATFKADVYALGMILLELLTGKVIKNDGFDLVKWVDSVVREEWTIEVFDKSLISQGASEERMMNLLQVALKCLNPSPNDRPSMSQVAVMTNALIEEEEKSISFDT 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium757g00001 604 SUPERFAMILY L domain-like 43 224 - -
Vium757g00001 604 Gene3D Phosphorylase Kinase; domain 1 318 403 - -
Vium757g00001 604 ProSiteProfiles Protein kinase domain profile. 329 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium757g00001 604 Gene3D Ribonuclease Inhibitor 189 235 IPR032675 -
Vium757g00001 604 SUPERFAMILY Protein kinase-like (PK-like) 333 587 IPR011009 -
Vium757g00001 604 Gene3D Transferase(Phosphotransferase) domain 1 404 603 - -
Vium757g00001 604 PANTHER OS05G0588300 PROTEIN 8 592 - -
Vium757g00001 604 Pfam Protein kinase domain 335 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium757g00001 604 Gene3D Ribonuclease Inhibitor 28 188 IPR032675 -
Vium757g00001 604 FunFam Leucine-rich repeat receptor protein kinase EMS1 91 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium757g00001 Vium-Chr757 10041 12169 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium757g00001 48 585 Receptor kinase-like Gene Family AT1G48480 31.376 3.41e-86 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium757g00001 Pkinase 1.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium757g00001 - - pvu:PHAVU_009G180700g 993.801