Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7573g00002 ATGGAATTCGCGTCTTCATCATCCAAACTCCCACGGTATTACGACGTGCTCATCAATTTCAATGGAGAAGACATCCTCACGAAATTTGTTTCTCATCTAGATTCTGTCCTCTCGTCCGTTGGACTCACCACTTTCCTTCACCATCAGAATGCAGTGGAGTCAACGCACGTCCAACAACCTATTCTCGATCTGTGTCGGGTAGTAATAGTTGTTTTCACCAAAACCTATTCTGAATCTGCTTGGTGTCTTCATCAGCTTCAACAAATCATTCAATGGCACCAAACTTATTGCCGACATGTTCTGCCTGTATATTACGAAATTCAGCCATCCGATGTACGTTTTCAGAAGGGTGATTTTGGAAAGGCCTTCAAAGAAACTGCACATCAAACATTTTCAGCACAACAACTTAAGCATGGCATGTCCAGATGGAGCCACGCACTCACCAAAGCTGCAAATTTGTTTGGATGGGATGAGAGTAATCACAGGAGTGATGCTGAACTAGTGCACGAAATTGTTAAGAGCGTTCGTAATTCATCAGTTTTTTCTGCTACTAAATTCCCAGTTGGATTACAATACCCAGTGGAAGAACTAATTCAAACTATAAAAGATAAATCCATGGATGTTTGTACAATAGGGATATGTGGAATGAGAGGATCAGGTAAAACCACCCTTGCCAAAGCCATCTACCATCAAATCCATGGTACATTCATGCATAAAAGTTTCATTGAAGGTATTGCACAATTTAGTGAACCAAGAGGGGGTATACATTTTCAGGAACAACTTCTTTCAGATGTCATAAAAACAAAGGTCAAGATAGATACCCTTGAGATGGGAAGAAATATGATTCGGGACAGACTTTCGGGGAAAAGGGTGCTTATTGTACTTGACGATATGGATGACTATCGTTCATTATTATATCTAAGGGAAAGTCGTTCATGGTTAAGTAAAGGAACTGTAATAATCATGACAACAAGAGACGACGACCTATTTAGGCAATATCAAGTTCAATCTGTTTTTCGGATAAATCCAATGAATGAAAATAGGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAACCGAAACCAAAAGAAGAATTCGATTACCTTGCAAGAAGATTAATTTCTCGTTGTGGAGGACTACCTCTAGTTCTTGAAGTCATTGGAAGTACCTTATTTGAAAGGACAGAAGAGGAATGGCATAGTGTATTGTTTGAATTAGAGAACATTCCCTTGTACAATGTTCAACTGAAATTGAAAATAAGCTTGAACCGTTTACGCAATCAATTGGAAAAGGATTTATTCCTTGATTTATGTTGTTTCTTTGTTGGTAAGGACAGAGCATATGCTACGAAAATCCTAAGTAGCTCTGTAGTAGAAGCTGATATTGAAGCAGGTGTTCTACATGACTTTAGAGTAGACGCTGATAGTGGAATAAGAGCTCTGATGGATCGTAACCTCATTAAAATCAAAAGGAATAACAAACTTGGAATGCATCCTTTACTACAAGAAATGGGAAAAACAATTTTTCGTGAAACTTCAAGAAGGAAACTTTGGAAGAACGGTCAACTGTTGTTTTATGTGGATGCAGAATATGCATTGAAAGGGAGAAAAGACTATGAGGTATTGCCTTTGATATTGCTTTCAACTAGAAGAGAACCATCAAGACTGCCGAAGGACGGTGTAAATTCTGAGAACCTTTCTCCGAAATTGAGGAGGATTAGTTTCCGTGGGTTTTCCATAGAATATATAACCAACGTCTTTAATGCGCATGATACAATAGCGATTGATCTAAAACACAGTCTTCTTCAATTCTTTTGGGATGCACCCCAGGTTTTGAGATCACTAAAAGTCCTTAACCTTAGTCACTCCATGTACTTAACAGAAACACCTGACTTTTCGAGACTACCATATCTTGAAGAACTCGTTCTAAAAGATTGTCCGAGATTGTGCAAAGTACACCAATCTATTGGACATCTCAGTTATCTTATAGTGCTCAATTTGAAGGGTTGTAAATGTCTAAGCAATCTGCCCAGAGGGATATATAAGTTGAAATCTTTAAGAACTCTTATCCTCTCTGGATGTTCGAAGATTGAGCCAATGGAGAAAGATATAGTGCAAATGAAATCCTTGATAACTCTAATTGCTGAAAATACCACTGCGAAACAAGTGCCTTTTTCAATTGTAAGTTCAAATGCGACTGGATATATATCCTCGCAAGGATTTGAGAGATTGTCATTTAATTCTTTTCCTTCAATCATTATTCGGTCTTGGATGTCGCCAACAATGAATCCCATATTTTATATTCATTCGTTGTGCGCGGATGTCGATAATAGTTGGGAAGATATTGGACCATTACTTAGTAGCCTGAAAAATCTTCGAAGTGTTTTGGTGCAATATGACAGCGACTTTCAATTATCTAAGCAAGTAAAAAATATTCTGGTCGACTATTTTTCAAATATTACCGAATCAGAAATTTCAAAGCAGCACTACAGGTCTTCTTTGATTGGTGTTGGAGCATACCATGAATTCTTCCATGCCGTCAGCGATAACATATCTGAGGTTCTTCTCTCCCTTTTCCTTTGTTTAATTCATTCTCCATCATTTTAG 2610 0.3808 MEFASSSSKLPRYYDVLINFNGEDILTKFVSHLDSVLSSVGLTTFLHHQNAVESTHVQQPILDLCRVVIVVFTKTYSESAWCLHQLQQIIQWHQTYCRHVLPVYYEIQPSDVRFQKGDFGKAFKETAHQTFSAQQLKHGMSRWSHALTKAANLFGWDESNHRSDAELVHEIVKSVRNSSVFSATKFPVGLQYPVEELIQTIKDKSMDVCTIGICGMRGSGKTTLAKAIYHQIHGTFMHKSFIEGIAQFSEPRGGIHFQEQLLSDVIKTKVKIDTLEMGRNMIRDRLSGKRVLIVLDDMDDYRSLLYLRESRSWLSKGTVIIMTTRDDDLFRQYQVQSVFRINPMNENRSLELLSWHAFREPKPKEEFDYLARRLISRCGGLPLVLEVIGSTLFERTEEEWHSVLFELENIPLYNVQLKLKISLNRLRNQLEKDLFLDLCCFFVGKDRAYATKILSSSVVEADIEAGVLHDFRVDADSGIRALMDRNLIKIKRNNKLGMHPLLQEMGKTIFRETSRRKLWKNGQLLFYVDAEYALKGRKDYEVLPLILLSTRREPSRLPKDGVNSENLSPKLRRISFRGFSIEYITNVFNAHDTIAIDLKHSLLQFFWDAPQVLRSLKVLNLSHSMYLTETPDFSRLPYLEELVLKDCPRLCKVHQSIGHLSYLIVLNLKGCKCLSNLPRGIYKLKSLRTLILSGCSKIEPMEKDIVQMKSLITLIAENTTAKQVPFSIVSSNATGYISSQGFERLSFNSFPSIIIRSWMSPTMNPIFYIHSLCADVDNSWEDIGPLLSSLKNLRSVLVQYDSDFQLSKQVKNILVDYFSNITESEISKQHYRSSLIGVGAYHEFFHAVSDNISEVLLSLFLCLIHSPSF 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7573g00002 869 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Vium7573g00002 869 Gene3D Ribonuclease Inhibitor 553 732 IPR032675 -
Vium7573g00002 869 SUPERFAMILY L domain-like 566 731 - -
Vium7573g00002 869 Pfam TIR domain 14 175 IPR000157 GO:0007165
Vium7573g00002 869 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 438 IPR027417 -
Vium7573g00002 869 PRINTS Disease resistance protein signature 682 698 - -
Vium7573g00002 869 PRINTS Disease resistance protein signature 285 299 - -
Vium7573g00002 869 PRINTS Disease resistance protein signature 378 392 - -
Vium7573g00002 869 PRINTS Disease resistance protein signature 210 225 - -
Vium7573g00002 869 Pfam NB-ARC domain 191 429 IPR002182 GO:0043531
Vium7573g00002 869 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 156 IPR035897 -
Vium7573g00002 869 Gene3D - 7 175 IPR035897 -
Vium7573g00002 869 Gene3D - 344 433 IPR042197 -
Vium7573g00002 869 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 722 IPR044974 GO:0006952
Vium7573g00002 869 SMART till_3 13 153 IPR000157 GO:0007165
Vium7573g00002 869 Gene3D - 176 339 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7573g00002 Vium-Chr7573 14205 17307 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7573g00002 11 728 WRKY Transcription Factor Family AT4G12020 26.667 2.89e-54 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7573g00002 - - vum:124845458 1717.59