Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7571g00003 ATGTGCAGTGAGACAGCATTCATGGTGGTGGTGCTACTTCTACTCCCCAAAATTCATGGTGGCTGCCCTCCTTCTTCCTGTGGCAAGATCACCATCATAACTTATCCGTTTCGATTACAAGGCGACCCAGAGAATTGTGGTGACGAAAGGTACGAGCTTGGTTGTGAGAATAATGTTACGATGTTGTATCTGCACTCTGCACAGTATCATGTTCAGGCAATCAACTACGACAACTACACCGTCAGAGTGGTTGACCCTGCACTTCAACACCACAACTGCTCCTCCCTTCCTCTCCGTTCCCTCTCTCGTTCCAATTTCTCTGATACTTACACGGACCGCATGGGTCCATACCAAGCCGGTCTAGATCCGGCTGGTAATTGGGAATCTCTGAATTTCGAGCATATAGTGTTTCTGAACTGTAACCATTCGGTGAGAGAGAAAGGAAAGTATGTGGAGAGTGGTGAGTGCGTGAAGTGGGACTCAAATGGCTATTCATATGCAGTTGGTGGAGACCTAAAAGCTAAGGACTTAGAAGTTGGGTGTTACGTTAAGCTTGTTGCTCCCACATCGTTCAGGACTTTGAATAACCATTCCTACGCTGCCATTCACAGGGCTCTCGCCTATGGATTTGAGATCTCTTGGATAAAACTCGCCTGTCAGAAGATTTCTTGTACATTTGGGGACGGCTTCTGCTATCTCGACTCTTCTAGCCAGAAGCTTCAATGCTCGTTTGGTTTACTGGACACCCTGGCAGGTATTGTCATTTATGCTTCTATGGTATGGGCCTACAAAATTTTGTTTGGATTGCCATTCTTAACTGTGATTTTCATACGTAAATGGTGGAAAAGACATGCATCAATGTATCAAAATATTGAAAATTATCTTGAACAGAATAATATGGCACCTATTAGATACTCATACAAGGAAATTAAGAAGATGGCCGGAGGTTTCAAAGAGAAGTTAGGCGAAGGAGGATTTGGTTCTGTCTTTAAGGCAAAGTTATGCAGTGGACCTTGTGTGGCAATCAAAATGTTAGATAAATCTAAAGGAAATGGACAAGATTTTATTAGCGAAGTTGCAACAATTGGAAGAATACATCATCAAAATGTGGTACAATTAATTGGATTTTGTGCTCATGGCTCAAAGCGTTATATTGTTTATGAATTCATGTCCAATGGATCTCTTGATAAATTTATTTTTTCAAAGGACGAGAGTGTATATTTAAGTTATGAAAAAATATATAATATATCAATTGAAGTGGCCCGCGGAATTGCTTATCTCCACCATGGGTGTGAGATGAAGATTTTGCATTTTGATATCAAACCCCACAACATCCTCCTTGATGAAAACTTTCTCCCGAAGATCTCTGACTTTGGATTGGCAAAGTTATATTCGATAGATAATAGTATTATTCCAATGACTGCAGCAAGAGGAACCATTGGATATATGGCTCCAGAGTTGTTCTATAATAATATTGGAGGAATATCCAATAAGGCTGATGTTTATAGTTTTGGAATGCTCTTGATGGAGATGGCAAGTAAGAGAAAGAATCTAAACCCTTCTGCAGAATATTCTAGTCAACTTTACTTTCCTCTTTGGATTTATGATCACATTAGAGAAGAGAAAATTATTAAAATGGAAGATTTGACAAAGGATGAAAAGTCAATAGTAAAGAAGATGATTATAGTGGCACTATGGTGTATACAATTGAAACCAAACGATCGTCCCTCAATGAATAAAGTAGTGGAAATGCTTGAAGGAGACATTAAAGACTTAGAAATGCCTCCAAAACCTTTTCTATATCCAAATGAAACAGTGACAGAGGATCAAACCATCAACTCCAACTAG 1848 0.3961 MCSETAFMVVVLLLLPKIHGGCPPSSCGKITIITYPFRLQGDPENCGDERYELGCENNVTMLYLHSAQYHVQAINYDNYTVRVVDPALQHHNCSSLPLRSLSRSNFSDTYTDRMGPYQAGLDPAGNWESLNFEHIVFLNCNHSVREKGKYVESGECVKWDSNGYSYAVGGDLKAKDLEVGCYVKLVAPTSFRTLNNHSYAAIHRALAYGFEISWIKLACQKISCTFGDGFCYLDSSSQKLQCSFGLLDTLAGIVIYASMVWAYKILFGLPFLTVIFIRKWWKRHASMYQNIENYLEQNNMAPIRYSYKEIKKMAGGFKEKLGEGGFGSVFKAKLCSGPCVAIKMLDKSKGNGQDFISEVATIGRIHHQNVVQLIGFCAHGSKRYIVYEFMSNGSLDKFIFSKDESVYLSYEKIYNISIEVARGIAYLHHGCEMKILHFDIKPHNILLDENFLPKISDFGLAKLYSIDNSIIPMTAARGTIGYMAPELFYNNIGGISNKADVYSFGMLLMEMASKRKNLNPSAEYSSQLYFPLWIYDHIREEKIIKMEDLTKDEKSIVKKMIIVALWCIQLKPNDRPSMNKVVEMLEGDIKDLEMPPKPFLYPNETVTEDQTINSN 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7571g00003 615 FunFam serine/threonine-protein kinase PBS1-like 283 389 - -
Vium7571g00003 615 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524
Vium7571g00003 615 Gene3D Phosphorylase Kinase; domain 1 278 389 - -
Vium7571g00003 615 Pfam Protein kinase domain 318 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7571g00003 615 Gene3D Transferase(Phosphotransferase) domain 1 390 594 - -
Vium7571g00003 615 FunFam PR5-like receptor kinase 390 597 - -
Vium7571g00003 615 Pfam Wall-associated receptor kinase galacturonan-binding 22 85 IPR025287 GO:0030247
Vium7571g00003 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Vium7571g00003 615 SUPERFAMILY Protein kinase-like (PK-like) 299 586 IPR011009 -
Vium7571g00003 615 ProSiteProfiles Protein kinase domain profile. 315 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7571g00003 615 SMART serkin_6 315 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7571g00003 615 PANTHER RUST RESISTANCE KINASE LR10-RELATED 287 605 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7571g00003 Vium-Chr7571 36512 39002 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7571g00003 22 601 Receptor kinase-like Gene Family AT5G38260 36.807 2.50e-111 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium7571g00003 Pkinase 2.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7571g00003 - - gmx:100782716 841.647