Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7567g00002 ATGGACAATTCTGGGTCTTCACAACCTCCATATGGGTATCCAAACCCTTATTTGTACCCTGGCAACACCCCTCCATACCCTCCTCCTGATCCATATGCACCACCACCATATCCATATCCATATCCACCAAATGCTCCAGATACCTTCAACTACTCATACCCCCCACCTTCTCCACCACCCTCAGCACCCTATTCTAGCCACACATACCCTCCTCCTCTTCATCCTCCACCACCACCTCATGATTCCTTTGCCTTTTCTATGCCTCAATCACCCAATACTTATCCTTACCCTCACCAAGATCCTCCAGAATGGAGTAACACAGGAGGTGAAGTACCTCAAAGTAGTGATAGTTATAAGCCTCCTGCCGTTTCTATTTACCCTCCTTTGGATGATCGCATGAGCATTGTCAGGATGTCTGAAACCACAAATGCACTTCCATTGTTGACTCGATCCCCTTCAATTTCAAATTACTTTAAAGATGAGTTTTATGGACTCTCTGTCTACTCCCCCTCAGATTTGGATAAAGAGGACCCTACTAGACCTTCTGTTCAATCTGATGACTCAATGAGTGATCACAGCTTGCAGATTGTCCCAATTCAGAACAAAGCGTCTCTGCCAGTTCTGCTCCTGCATGGGAATTTAGATATTTGGGTTCATCGAGCCAAACACCTTCCAAACATGGACATGTTCCACAAGACTTTGGGAGATGTATTTGGGAAGTTGCCTGTAAATGTCAACAAGGTGGATGGAACGGTGAGCCGGAAGATTACCAGTGATCCTTATGTAACAGTTTCTGTGTCTAATGCTGTTATTGGGAGGACTTTTGTGATTAGCAATAGTGAAAACCCTGTGTGGGAGCAACATTTCTATGTTCCTGTTGCACATCATGTAGCTGAAGTTCATTTTGTTGTGAAGGACAGTGATGTGGTGGGTTCGCAGCTCATTGGTGTTGTGGCAATTCCAGCTGAAAAGATATACTCAGGGGAAAAGATACAAGGGAGCTACCCTATTCTGAATAGCAGTGGGAAGCCATGTAAGCCAGGTGCTATCTTGATATTATCCATTCAATACATTCCAATAGAGAAACTTATCACTTATCATCAAGGAGTTGGAGCTGGTCCTGAATATCATGGGGTTCCTGGCACGTATTTTCCATTGAGGAAAGGTGGAATGGTAAATCTATATCAAGATGCTCATGTTCCAAGTGGTTCTCTACCAAATGTTAAGCTTAACCATGGCTTGTATTACAATCATGGAAAGTGTTGGAATGACATCTTTGAAGCCATACGTGCAGCTCAGAGATTGGTTTACATTACGGGGTGGTCTGTGTGGCACAAAGTTAGGTTGGTAAGGGATGCTGACAATGCAACAGATTCCACCCTGGGTGAACTTCTTAGGACTAAGTCATCGGAGGGAGTCAGAGTGCTTCTACTTGTATGGGATGACCCTACATCAAGAAGCATTCTTGGTTACAAAATGGATGGTGTAATGGCAACTCATGATGAGGAAACTAGACGATTTTTCAAGCACTCTTCTGTGCAAGTGCTGCTTTGTCCTCGCTTTGCTGGAAAACGACATAGCTGGGCCAAACAAAAGGAAGTTGGAACAATATATACACATCATCAGAAAACTGTAATTGTGGATGCTGATGCTGGAAATGACAAAAGAAAAATTGTGGCATTTATTGGTGGACTGGATTTGTGTGATGGGCGATATGATAATCCTTACCATCCTCTCTTTAGGACACTGCAGACACTGCATAAGGATGACTATCACAACCCTACTTTCACGGGTAATACTGGAGGTTGTCCACGGGAGCCATGGCATGACTTACATTCTAAAATTGATGGTCCAGCAGCTTATGATGTTTTGACCAACTTTGAGGAGCGCTGGTTAAGAGCTGCGAAACCTAAAGGGATAAAAAAGCTTACAAGTTCATATGATGATGCATTACTTAAGCTAGACAGAATAAAAGATATTATCAGTACATCTGATGATCTTGATCTTGATGAGGATAATAATCCTGCATCATGGCATGTTCAGATATTCCGTTCAATTGATTCAAATTCGGTCAAGGGATTTCCGAAGGATCCAAAAGATGCATCAAGCGTTAATCTGGTATGTGGGAAGAATGTACTGATTGACATGAGTATACATACAGCATATATAAAGGCCATTCGTGCTGCACAACATTACATTTATATTGAGAATCAATATTTCATTGGGTCTTCATATAATTGGAGCCAATATAAAGACCTTGGTGCTAATAATTTAATTCCAATGGAAATTGCACTGAAGATTGCTGCAAAGATAAGGGCAAATGAGAGATTTGCAGTGTACATTGTTATTCCAATGTGGCCGGAGGGTGTTCCAACAGGTGCTGCCACTCAAAGGATTCTATTTTGGCAGCACAAAACAATGCAAATGATGTATGAAACAATTTACAAGGCTTTGGTTGAAGTTGGGCTTGAAGGAGCATTCTCTCCACAAGACTATTTGAACTTCTTCTGTCTTGGCAATCGGGAGGCAGTAGATGTGTATGAGAATGTCACTGTGTCTGGAAATCCTCCAGCAGCAAATAGTCCACAAGCAATTAGTAGAAACAATCGACGATTCATGATTTATGTTCATTCAAAAGGCATGATAGTTGATGATGAATATGTCATATTGGGGTCTGCCAACATCAACCAGCGCTCTATGGAAGGAACAAGGGACACTGAGATTGCAATGGGTGCATACCAACCTTATCATACCTGGGCAAGAAGACAGTTTTATCCACTTGGGCAGATCCATGGATATAGAATGTCACTTTGGGCAGAACATACAGGTACTATTGAAGACTGTTTTTCAGAACCAGAGAGCATTGAATGTGTTAGGAGGATTAGAACAATGGGTGAACAGAACTGGAAACAATATGCATCAAATGATGCAACAGAGATGAAAGGGCATCTACTCAAGTACCCTGTAGAAGTTGATAGAAAGGGTAAGGTAAGATCCCTTCCTGGTCAGGATGAGTTTCCAGATGTGGGTGGAAAGATTATAGGATCATTTATTGCCATTCAGGAAAATCTAACCATTTGA 3081 0.4203 MDNSGSSQPPYGYPNPYLYPGNTPPYPPPDPYAPPPYPYPYPPNAPDTFNYSYPPPSPPPSAPYSSHTYPPPLHPPPPPHDSFAFSMPQSPNTYPYPHQDPPEWSNTGGEVPQSSDSYKPPAVSIYPPLDDRMSIVRMSETTNALPLLTRSPSISNYFKDEFYGLSVYSPSDLDKEDPTRPSVQSDDSMSDHSLQIVPIQNKASLPVLLLHGNLDIWVHRAKHLPNMDMFHKTLGDVFGKLPVNVNKVDGTVSRKITSDPYVTVSVSNAVIGRTFVISNSENPVWEQHFYVPVAHHVAEVHFVVKDSDVVGSQLIGVVAIPAEKIYSGEKIQGSYPILNSSGKPCKPGAILILSIQYIPIEKLITYHQGVGAGPEYHGVPGTYFPLRKGGMVNLYQDAHVPSGSLPNVKLNHGLYYNHGKCWNDIFEAIRAAQRLVYITGWSVWHKVRLVRDADNATDSTLGELLRTKSSEGVRVLLLVWDDPTSRSILGYKMDGVMATHDEETRRFFKHSSVQVLLCPRFAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGNDKRKIVAFIGGLDLCDGRYDNPYHPLFRTLQTLHKDDYHNPTFTGNTGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLRAAKPKGIKKLTSSYDDALLKLDRIKDIISTSDDLDLDEDNNPASWHVQIFRSIDSNSVKGFPKDPKDASSVNLVCGKNVLIDMSIHTAYIKAIRAAQHYIYIENQYFIGSSYNWSQYKDLGANNLIPMEIALKIAAKIRANERFAVYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREAVDVYENVTVSGNPPAANSPQAISRNNRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPYHTWARRQFYPLGQIHGYRMSLWAEHTGTIEDCFSEPESIECVRRIRTMGEQNWKQYASNDATEMKGHLLKYPVEVDRKGKVRSLPGQDEFPDVGGKIIGSFIAIQENLTI 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7567g00002 1026 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 536 571 IPR001736 GO:0003824
Vium7567g00002 1026 PANTHER PHOSPHOLIPASE D 204 1016 IPR015679 -
Vium7567g00002 1026 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 872 899 IPR001736 GO:0003824
Vium7567g00002 1026 Pfam C2 domain 212 337 IPR000008 -
Vium7567g00002 1026 Gene3D Endonuclease Chain A 684 918 - -
Vium7567g00002 1026 FunFam Phospholipase D delta 207 353 - -
Vium7567g00002 1026 Pfam Phospholipase D C terminal 946 1016 IPR024632 -
Vium7567g00002 1026 FunFam Phospholipase D 685 918 - -
Vium7567g00002 1026 MobiDBLite consensus disorder prediction 169 190 - -
Vium7567g00002 1026 ProSiteProfiles C2 domain profile. 190 335 IPR000008 -
Vium7567g00002 1026 MobiDBLite consensus disorder prediction 106 120 - -
Vium7567g00002 1026 CDD C2_plant_PLD 207 358 - -
Vium7567g00002 1026 Gene3D Endonuclease Chain A 409 654 - -
Vium7567g00002 1026 Gene3D C2 domain 208 344 IPR035892 -
Vium7567g00002 1026 MobiDBLite consensus disorder prediction 1 122 - -
Vium7567g00002 1026 SMART C2_3c 213 334 IPR000008 -
Vium7567g00002 1026 SMART pld_4 872 899 IPR001736 GO:0003824
Vium7567g00002 1026 SMART pld_4 536 571 IPR001736 GO:0003824
Vium7567g00002 1026 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 210 360 IPR035892 -
Vium7567g00002 1026 FunFam Phospholipase D delta 412 650 - -
Vium7567g00002 1026 SUPERFAMILY Phospholipase D/nuclease 718 957 - -
Vium7567g00002 1026 MobiDBLite consensus disorder prediction 13 84 - -
Vium7567g00002 1026 Pfam Phospholipase D Active site motif 537 571 IPR001736 GO:0003824
Vium7567g00002 1026 Pfam Phospholipase D Active site motif 873 899 IPR001736 GO:0003824
Vium7567g00002 1026 SUPERFAMILY Phospholipase D/nuclease 378 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7567g00002 Vium-Chr7567 25756 34435 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7567g00002 36 1026 Phospholipase D Gene Family (Wang group) AT2G42010 67.996 0.0 1400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7567g00002 K01115 - gmx:100805294 1606.65