Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7565g00002 ATGGGGAAGAAAGGAGGCAGCTGGTTTTCCTCCGTCAAAAAAGTTTTCAAATCCTCTTCTAATAAGGACTCGCCGGTGCCGGAGAAGAAGAAAGACAACAAGAAGGAAGAACAATGGCAGCTGCATGAGGCCCCAGAGGAGGTGTCCTTGGAGCATTTTCCTGCTGAGAGTTCTCCTGATATTACCAATGAAGGGAGTGCCACGTCAACACCGGTGACTGAAGATAGAAGCCATGCTATGGCCTTTGCAGCCGCAACTTCTGCCGCTGCCGAAGCCGCAGTAGCAGCTGCTCAAGCGGCCGCTAGAGTTGTGAGATTGGCAGGTTATGGACGCCAATCCACGGAAGAAAGAGCTGCAATACTCATTCAATCATACTACAGAGGTTACCTAGCTCGACGTGCTTTGCGGGCTTTGAAGGGATTGGTGAGACTTCAAGCGCTTGTGAGGGGACACAATGTGAGAAAGCAAGCGCAGATGACAATGCGATGCATGCATGCATTAGTCCGAGTACAGGCAAGAGTAAGAGCTCGAAGACTCCAGTTGACTCAAGAGAAGTATCAGAGAAGAGTTGAGGAACAGGTCCAAAGAGGACTAGAGGAACAACAACAACCTAAGCTACTTTTGAGCCCCATCAAAATGTTAGACATGGATACATGGGACAATAGGCGTCAAAGTAGCCAACAGATTAAGGAGAATAATTTGAGGAAACATGAAGCTGCAATGAAGAGGGAGAGAGCTCTTGCATACGCTTTCAACTGTCAGCAGCAGAAGCAAAATCCAAATGATGATGATGTTGGAAGCTATAGCAATGAGCGTGAAAGAGCCGAAATGGATTGGAACTGGTTGGAACGGTGGATGTTATCACAATCACAGAACTCAAGGCACTTTGGGTCACGGGAGAACCTTTATAGAACTCTTGCTACTGCAACTTCCACCACTGATGACATGTCTGAAGAAAAAACAGTTGAAATTGACATGGCTGCAACTCTGGATTCAGCTCATGCTAACATGGGTCTCATCCACCAAGAATCTTTTGACACAAGCCCAATATCCAATAGGTACCACCAGCGCCACCACAGTGCAGGTGTACCAAGCTACATGGCCCCAACTCAGTCTGCAAAGGCCAAGGCTCGTAATCAAGGCCTGTTTAAAAATAGGGGTTCACCTGGGCCTAACTGGAACTCGTCCACCAGGAGAAGTTCCATTCTAGGGCTAGGCTGTGACTCAACTAGCTCTGGTGGGCCCACTGCAGCTCATGGGTTCCCAAGAAGTCCAAGCCCAAAAATTAATGAAATTCGCCTCCAATCCAGACGGATTTCAGGTAGCAGCCCGGATAATGTTCACATTGAGGATTGGGCCCTTCCCCTTGGAACCAGTGGTTGGACTTGA 1389 0.4831 MGKKGGSWFSSVKKVFKSSSNKDSPVPEKKKDNKKEEQWQLHEAPEEVSLEHFPAESSPDITNEGSATSTPVTEDRSHAMAFAAATSAAAEAAVAAAQAAARVVRLAGYGRQSTEERAAILIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMHALVRVQARVRARRLQLTQEKYQRRVEEQVQRGLEEQQQPKLLLSPIKMLDMDTWDNRRQSSQQIKENNLRKHEAAMKRERALAYAFNCQQQKQNPNDDDVGSYSNERERAEMDWNWLERWMLSQSQNSRHFGSRENLYRTLATATSTTDDMSEEKTVEIDMAATLDSAHANMGLIHQESFDTSPISNRYHQRHHSAGVPSYMAPTQSAKAKARNQGLFKNRGSPGPNWNSSTRRSSILGLGCDSTSSGGPTAAHGFPRSPSPKINEIRLQSRRISGSSPDNVHIEDWALPLGTSGWT 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7565g00002 462 PANTHER IQ-DOMAIN 5-RELATED 1 401 - -
Vium7565g00002 462 Gene3D - 113 166 - -
Vium7565g00002 462 Pfam Protein of unknown function (DUF4005) 348 402 IPR025064 -
Vium7565g00002 462 Coils Coil 176 196 - -
Vium7565g00002 462 MobiDBLite consensus disorder prediction 59 73 - -
Vium7565g00002 462 SMART iq_5 114 136 IPR000048 GO:0005515
Vium7565g00002 462 SMART iq_5 137 158 IPR000048 GO:0005515
Vium7565g00002 462 MobiDBLite consensus disorder prediction 15 73 - -
Vium7565g00002 462 ProSiteProfiles IQ motif profile. 139 166 IPR000048 GO:0005515
Vium7565g00002 462 MobiDBLite consensus disorder prediction 405 429 - -
Vium7565g00002 462 MobiDBLite consensus disorder prediction 23 50 - -
Vium7565g00002 462 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Vium7565g00002 462 Pfam IQ calmodulin-binding motif 142 157 IPR000048 GO:0005515
Vium7565g00002 462 Pfam IQ calmodulin-binding motif 116 136 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7565g00002 Vium-Chr7565 9543 13523 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7565g00002 1 433 IQD Protein Family AT3G49260 49.672 2.60e-98 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7565g00002 - - gmx:100808965 687.952