Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7565g00001 ATGGGGAAGAAAGGAGGCAGCTGGTTTTCCTCCGTCAAAAAAGTTTTCAAATCCTCTTCTAATAAGGACTCGCCGGTGCCGGAGAAGAAGAAAGACAACAAGAAGGAAGAACAATGGCAGCTGCATGAGGCCCCAGAGGAGGTGTCCTTGGAGCATTTTCCTGCTGAGAGTTCTCCTGATATTACCAATGAAGGGAGTGCCACGTCAACACCGGTGACTGAAGATAGAAGCCATGCTATGGCCTTTGCAGCCGCAACTTCTGCCGCTGCCGAAGCCGCAGTAGCAGCTGCTCAAGCGGCCGCTAGAGTTGTGAGATTGGCAGGTTATGGACGCCAATCCACGGAAGAAAGAGCTGCAATACTCATTCAATCATACTACAGAGGTTACCTAGCTCGACGTGCTTTGCGGGCTTTGAAGGGATTGGTGAGACTTCAAGCGCTTGTGAGGGGACACAATGTGAGAAAGCAAGCGCAGATGACAATGCGATGCATGCATGCATTAGTCCGAGTACAGGCAAGAGTAAGAGCTCGAAGACTCCAGTTGACTCAAGAGAAGTATCAGAGAAGAGTTGAGGAACAGGTCCAAAGAGGACTAGAGGAACAACAACAACCTAAGCTACTTTTGAGCCCCATCAAAATGTTAGACATGGATACATGGGACAATAGGCGTCAAAGTAGCCAACAGATTAAGGAGAATAATTTGAGGAAACATGAAGCTGCAATGAAGAGGGAGAGAGCTCTTGCATACGCTTTCAACTGTCAGCAGAAGCAAAATCCAAATGATGATGATGTTGGAAGCTATAGCAATGAGCGTGAAAGAGCCGAAATGGATTGGAACTGGTTGGAACGGTGGATGTTATCACAATCACAGAACTCAAGGCACTTTGGGTCACGGGAGAACCTTTATAGAACTCTTGCTACTGCAACTTCCACCACTGATGACATGTCTGAAGAAAAAACAGTTGAAATTGACATGGCTGCAACTCTGGATTCAGCTCATGCTAACATGGGTCTCATCCACCAAGAATCTTTTGACACAAGCCCAATATCCAATAGGTACCACCAGCGCCACCACAGTGCAGGTGTACCAAGCTACATGGCCCCAACTCAGTCTGCAAAGGCCAAGGCTCGTAATCAAGGCCTGTTTAAAAATAGGGGTTCACCTGGGCCTAACTGGAACTCGTCCACCAGGAGAAGTTCCATTCTAGGGCTAGGCTGTGACTCAACTAGCTCTGGTGGGCCCACTGCAGCTCATGGGTTCCCAAGAAGTCCAAGCCCAAAAATTAATGAAATTCGCCTCCAATCCAGACGGATTTCAGGTAGCAGCCCGGATAATGTTCACATTGAGGATTGGGCCCTTCCCCTTGGAACCAGTGGTTGGACTTGA 1386 0.4827 MGKKGGSWFSSVKKVFKSSSNKDSPVPEKKKDNKKEEQWQLHEAPEEVSLEHFPAESSPDITNEGSATSTPVTEDRSHAMAFAAATSAAAEAAVAAAQAAARVVRLAGYGRQSTEERAAILIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMHALVRVQARVRARRLQLTQEKYQRRVEEQVQRGLEEQQQPKLLLSPIKMLDMDTWDNRRQSSQQIKENNLRKHEAAMKRERALAYAFNCQQKQNPNDDDVGSYSNERERAEMDWNWLERWMLSQSQNSRHFGSRENLYRTLATATSTTDDMSEEKTVEIDMAATLDSAHANMGLIHQESFDTSPISNRYHQRHHSAGVPSYMAPTQSAKAKARNQGLFKNRGSPGPNWNSSTRRSSILGLGCDSTSSGGPTAAHGFPRSPSPKINEIRLQSRRISGSSPDNVHIEDWALPLGTSGWT 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7565g00001 461 Coils Coil 176 196 - -
Vium7565g00001 461 MobiDBLite consensus disorder prediction 59 73 - -
Vium7565g00001 461 Gene3D - 115 165 - -
Vium7565g00001 461 SMART iq_5 114 136 IPR000048 GO:0005515
Vium7565g00001 461 SMART iq_5 137 158 IPR000048 GO:0005515
Vium7565g00001 461 MobiDBLite consensus disorder prediction 15 73 - -
Vium7565g00001 461 MobiDBLite consensus disorder prediction 403 428 - -
Vium7565g00001 461 ProSiteProfiles IQ motif profile. 139 166 IPR000048 GO:0005515
Vium7565g00001 461 Pfam Protein of unknown function (DUF4005) 347 401 IPR025064 -
Vium7565g00001 461 MobiDBLite consensus disorder prediction 23 50 - -
Vium7565g00001 461 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Vium7565g00001 461 PANTHER IQ-DOMAIN 5-RELATED 1 400 - -
Vium7565g00001 461 Pfam IQ calmodulin-binding motif 142 157 IPR000048 GO:0005515
Vium7565g00001 461 Pfam IQ calmodulin-binding motif 116 136 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7565g00001 Vium-Chr7565 9542 13523 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7565g00001 1 432 IQD Protein Family AT3G49260 49.672 1.39e-96 297