Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7555g00004 ATGACAGGAAAAGATATCCTCAATATGATGAAGGTGAAAGCAGGGTTTGGAACATCAACACCAGAGACAGGGAAAGGAAAAGGAAAAATATCAAAACATATTACACATGGCTTTCACTTGATGAAGGGAAAATCTGGACATCCCATGGAAGATTATTTAGTTTCGGAATTCAAGCAAGAAAAGGACAGAGAATTAGGCTTGTTTGCAATATTTGATGGCCACTTAGGCCACGATGTTGCGAGCTATTTGCAGAACCATCTTTTCCATAACATCTTGAAACAGCATGACTTTTGGAATGAGACAGAACACGCAGTGAAGAGGGCTTATATTGAAACTGATGAGAAAATATTGGAACAAGCACTTGAATTGGGGCGAGGAGGGTCAACAGCTGTAACTGCAATACTGATAGATGGTCAGAAGCTTGTAGTAGGAAATGTTGGTGACTCAAGAGCTGTTATTTGTGAGCATGGAAAGGCTAGGCAACTGTCTGTAGATCATGAACCAAGCAAGGAAAAGAAATCTATTGAGAGACGTGGAGGCTTTGTATCAAACATTCCAGGAGATGTCCCTCGAGTAGATGGACAGTTAGCAGTAGCAAGAGCTTTTGGTGATAGGAGCTTGAAGATGCATCTTAGTTCAGAACCTGATGTGTTTATAGAGGAAGTACTTCATCATACAGAGTTTCTTATTCTGGCCAGTGATGGAATATGGAAGGTAATGTCAAACCAAGAAGCAGTGGATTCCATTAGGCAAATAAAGGATGCTCAAGCTGCAGCAAAGCACTTGATAGAAGAAGCAGTTTCCAAGAAAAGTAAAGATGATATTTCTTGCATAGTTGTGAGGTTCCAATGA 852 0.4038 MTGKDILNMMKVKAGFGTSTPETGKGKGKISKHITHGFHLMKGKSGHPMEDYLVSEFKQEKDRELGLFAIFDGHLGHDVASYLQNHLFHNILKQHDFWNETEHAVKRAYIETDEKILEQALELGRGGSTAVTAILIDGQKLVVGNVGDSRAVICEHGKARQLSVDHEPSKEKKSIERRGGFVSNIPGDVPRVDGQLAVARAFGDRSLKMHLSSEPDVFIEEVLHHTEFLILASDGIWKVMSNQEAVDSIRQIKDAQAAAKHLIEEAVSKKSKDDISCIVVRFQ 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7555g00004 283 SMART PP2C_4 24 280 IPR001932 -
Vium7555g00004 283 ProSiteProfiles PPM-type phosphatase domain profile. 35 282 IPR001932 -
Vium7555g00004 283 FunFam Probable protein phosphatase 2C 39 25 283 - -
Vium7555g00004 283 SMART PP2C_SIG_2 49 282 IPR001932 -
Vium7555g00004 283 Gene3D - 30 283 IPR036457 -
Vium7555g00004 283 CDD PP2Cc 36 282 IPR001932 -
Vium7555g00004 283 SUPERFAMILY PP2C-like 32 282 IPR036457 -
Vium7555g00004 283 PANTHER PROTEIN PHOSPHATASE 31 282 IPR015655 GO:0004722|GO:0006470
Vium7555g00004 283 Pfam Protein phosphatase 2C 47 275 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7555g00004 Vium-Chr7555 68439 70909 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7555g00004 24 282 PP2C-type Phosphatase Gene Family AT4G28400 74.131 6.70e-143 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7555g00004 K17506 - gmx:100819846 509.22