Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7555g00002 ATGAGCACCCTTTGTGCAGAGCACAAGTTCCAACTTCAACCCTCTCACCAGCTTCTCTCTCTCAAAAAGTCCCTCAGAGACCTTGACATCCCGCCAAGGAAGCTTCTCACGCGCCGCTCCGCCGCCGACATCTTTTCCGACGACATCCTCCTGCACAAGTACCTCGCGCACACCAAATCCATGGAATCCGACGACTCTGATGACGTCGGAGACCCCTATGCCTCCGACGAATTCCGCATGTTCGAGTTCAAGGTTCGTCGCTGCACTCGTAGCCGGAGCCATGACTGGACAGACTGCCCTTTTGCACACCCCGGCGAGAAGGCCCGCCGCCGCGACCCTCGCCGGTTTCATTACTCCGGGACCGTTTGTCCGGAGTATCGCCGCGGGCAGTGCAGCAGCGGCGATGCATGTGAGTTCTCTCATGGGGTGTTCGAGTGCTGGTTGCACCCTTCGAGGTATAGAACCGAGGCTTGCAAGGATGGGAAGAATTGCAAGCGAAAAGTTTGCTTTTTCGCTCACACCCCTCGCCAACTGAGAGTTTTGCCTCCCCAAGACAGCGACAAGAAGAAAAAGGGCAGCAATATGAGTCCTCATAATAATAACAACAATAACAGTAACCATTGTTGTTTGTTTTGTAATTGTTCATCCACCTGTTCACCAACTTCTACCTTGTTTGGCATGTCTCATTTTTCTCCTCCTTTATCACCCTCTTCTTCTTCCTCTTCCCCTTCCCCTTCTAGGTTTGAGCCTGGCCACCGTCACGGTGTTGTGAGCTACAACGATGTGTTCTCTGAGCTTATGTGCTCCATGGAGGCTTTGAATTTTGGTGAGGCTTCGTCTGTCTCTGCTTCTAAGCCTCATACTCTTCTGTCTTGGCATGATGTCTCTGAGGATCATAAGCAGTTCAATGTTCATTCACCAACCACAGCTACCCGTGGAAGCTTTTCCAATAATGCGAACGGAAGGTTTTGGAGGGAAGAAAGTGGAAGCTTTTCCATGAATAGAAATGGAAGATTATTTAGGGAAGAAAGTGGGGTTGTTGATGATGTCATTGCCCCAGATCTGGCGTGGGTTAATGACTTGCTGATGTAG 1092 0.5073 MSTLCAEHKFQLQPSHQLLSLKKSLRDLDIPPRKLLTRRSAADIFSDDILLHKYLAHTKSMESDDSDDVGDPYASDEFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGQCSSGDACEFSHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHTPRQLRVLPPQDSDKKKKGSNMSPHNNNNNNSNHCCLFCNCSSTCSPTSTLFGMSHFSPPLSPSSSSSSPSPSRFEPGHRHGVVSYNDVFSELMCSMEALNFGEASSVSASKPHTLLSWHDVSEDHKQFNVHSPTTATRGSFSNNANGRFWREESGSFSMNRNGRLFREESGVVDDVIAPDLAWVNDLLM 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7555g00002 363 FunFam Zinc finger CCCH domain-containing protein 66 75 143 - -
Vium7555g00002 363 MobiDBLite consensus disorder prediction 180 199 - -
Vium7555g00002 363 Gene3D - 117 181 - -
Vium7555g00002 363 ProSiteProfiles Zinc finger C3H1-type profile. 118 144 IPR000571 GO:0046872
Vium7555g00002 363 PANTHER UNKEMPT FAMILY MEMBER 52 362 IPR045234 -
Vium7555g00002 363 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 142 IPR000571 GO:0046872
Vium7555g00002 363 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Vium7555g00002 363 SMART c3hfinal6 152 175 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7555g00002 Vium-Chr7555 54759 56165 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7555g00002 73 243 C2H2 Transcription Factor Family AT5G12850 49.708 7.31e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium7555g00002 zf-CCCH 9.6e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7555g00002 K23047 - gmx:100820375 502.671