Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7555g00001 ATGGTCGCCAAGGACAAAACGGTCATAAAGAATAAGAAGCCAAACAATGCTGCCGACGAGGTTCACTACCGCGGCGTCCGAAAGCGCCCCTGGGGCCGCTACGCCGCCGAGATCCGCGACCCCGGCAAGAAATCTCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGAAGCCGCCAGAGCCTACGACGCCGCCGCCCGCAACTTCCGCGGCCCCAAAGCTAAAACCAACTTTCCCCTTCTCCCCGACACCGCCGCCGCTGTCACTATCAACAACAACGTTAACCGGAACAACAACAACAACAACGTAACAAACAACGCTAGCAGCAGCAGCAGCCCTAGCCAGAGCAGCACCGTCGAGTCCGCCACCCCGGAGCGTGACGTCACGCGCCTCGCCGCCACTGCCGTCATCGACCGCTTCCCCTTCCTCCCGATCCAGCAGCAGCTGCTCGTGGCCCCGGTTGCTCCCGTGCGCCCGGTTTTTCTCCTGGACCGCGCCCATTACCTCACCCATCAATTCCCCTTCCGGTTCGAACCGGCCCCGGTTCAGAGCGACTCCGATTCCTCCTCCGTTGTCGATTGCCAACCCAAAAGAGAACTCAATCTCGATCTCAACCTGGCTCCTCCTATGGATTATTAA 639 0.6088 MVAKDKTVIKNKKPNNAADEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARNFRGPKAKTNFPLLPDTAAAVTINNNVNRNNNNNNVTNNASSSSSPSQSSTVESATPERDVTRLAATAVIDRFPFLPIQQQLLVAPVAPVRPVFLLDRAHYLTHQFPFRFEPAPVQSDSDSSSVVDCQPKRELNLDLNLAPPMDY 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7555g00001 212 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Vium7555g00001 212 MobiDBLite consensus disorder prediction 93 124 - -
Vium7555g00001 212 FunFam Ethylene-responsive transcription factor 2 21 80 - -
Vium7555g00001 212 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Vium7555g00001 212 MobiDBLite consensus disorder prediction 1 22 - -
Vium7555g00001 212 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Vium7555g00001 212 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Vium7555g00001 212 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Vium7555g00001 212 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Vium7555g00001 212 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Vium7555g00001 212 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Vium7555g00001 212 MobiDBLite consensus disorder prediction 93 126 - -
Vium7555g00001 212 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7555g00001 Vium-Chr7555 2470 3506 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7555g00001 20 210 AP2-EREBP Transcription Factor Family AT5G44210 48.205 1.81e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium7555g00001 AP2 5.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7555g00001 K09286 - gmx:100801924 262.692