Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7548g00003 ATGGAAAAATTAGTTTTCAGTGGTCTAATACTACTTGTGGTGTTGTTCACCATAGAACTTAGAGTAGCATCCGCAGGTTGGTTGAAAGCTCATGCAACTTTCTATGGTGGAAGTGATGCCTCAGGAACAATGGGTGGTGCATGTGGCTATGGAAATCTCAACACAGATGGTTATGGAATAAAAACTGCTGCTTTGAGTACTGCTTTGTTTAATGATGGCAAATCATGTGGTGGTTGCTATCAGATAGTTTGTGACGCAAGCCAAGTGCCCCAATGGTGCCTAAGTGGCACTTCCATTACGATCACTGCTACAAATTTCTGCCCTCCAAACTTTGCACTACCTAGTGACAATGGGGGTTGGTGTAATCCTCCAAGACCACACTTTGACATGTCTCAACCTGCCTTTGAGATGATCGCCAAATACAAGGCTGGAATTGTCCCAATTTTATACAGAAAAGTTGGGTGCAAAAGAAGTGGAGGCATCAGATTTACCATCAATGGGAAGGACTTTTTCGAACTGGTGCTTATAAGCAACGTAGGAGGAGCAGGGGATATTTCTCTAGTTTGGATCAAAGGGTCAAAAATGAGTAACTGGGAATCTATGTCAAGGAATTGGGGTGCTAACTGGCAAAGCTTAAGCTACCTCAACGGCCAGAGCTTGTCCTTCAGAATCCAACTCAGCAATGGAAAGACTCTCACAGCTTTTGATGTGGCACCGTCCAATTGGAGATTTGGCCAGTCTTTCATCAGCAAGGCTCAGTCATGA 765 0.4405 MEKLVFSGLILLVVLFTIELRVASAGWLKAHATFYGGSDASGTMGGACGYGNLNTDGYGIKTAALSTALFNDGKSCGGCYQIVCDASQVPQWCLSGTSITITATNFCPPNFALPSDNGGWCNPPRPHFDMSQPAFEMIAKYKAGIVPILYRKVGCKRSGGIRFTINGKDFFELVLISNVGGAGDISLVWIKGSKMSNWESMSRNWGANWQSLSYLNGQSLSFRIQLSNGKTLTAFDVAPSNWRFGQSFISKAQS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7548g00003 254 FunFam Expansin 17 156 - -
Vium7548g00003 254 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Vium7548g00003 254 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Vium7548g00003 254 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Vium7548g00003 254 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Vium7548g00003 254 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Vium7548g00003 254 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Vium7548g00003 254 Pfam Expansin C-terminal domain 161 239 IPR007117 -
Vium7548g00003 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 160 IPR007112 -
Vium7548g00003 254 SUPERFAMILY PHL pollen allergen 157 250 IPR036749 -
Vium7548g00003 254 Gene3D - 17 156 IPR036908 -
Vium7548g00003 254 PANTHER EXPANSIN-A15 10 250 IPR002963 GO:0009664
Vium7548g00003 254 FunFam Expansin 160 253 - -
Vium7548g00003 254 Pfam Lytic transglycolase 62 150 IPR009009 -
Vium7548g00003 254 SMART dpbb_1 62 150 IPR007112 -
Vium7548g00003 254 SUPERFAMILY Barwin-like endoglucanases 15 178 IPR036908 -
Vium7548g00003 254 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Vium7548g00003 254 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Vium7548g00003 254 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Vium7548g00003 254 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Vium7548g00003 254 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Vium7548g00003 254 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Vium7548g00003 254 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Vium7548g00003 254 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Vium7548g00003 254 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Vium7548g00003 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 250 IPR007117 -
Vium7548g00003 254 Gene3D - 160 254 IPR036749 -
Vium7548g00003 254 CDD DPBB_EXPA_N 26 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7548g00003 Vium-Chr7548 6405 10700 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7548g00003 5 250 Expansin Gene Family AT4G01630 75.806 5.13e-144 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7548g00003 - - gmx:100813434 489.189