Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7539g00001 ATGACCGAAGCCATGGGTGTTGTTTTGACTTATAGGCACGAGTTAGGAATGAACTATAACTTCATCCGTCCAGACTTAATTGTGGGATCATGCCCACAGACTCCTGACGATGTTGAGAAGTTGCATAGAATTGGAGTGAAAACAATATTTTGTTTACAACAAAATCCAGACCTTGAATATTTTGGAGTTGATATTAAGGCCATACAAGAATATGCCAAGGCACATGATGTTCAACACTTGCGAGCTGAGATAAGAGACTTTGATGCATTTGATCTACGGATGCGGCTTCCAGCTGTAGTTAGCAAATTGTATAAGGCAATAAATTCCAACGGAGGAGTAACATATATTCATTGCACTGCTGGACTTGGAAGAGCTCCTGCCGTTGCAACGGCCTACATGTTTTGGGCTCTGGGATATACATTCAAAGAGGCTCATACACTACTTCAGAGCAAAAGGGAGTGTTTTCCCAAACTAGATGCCATTAAAAGTGCAACAGCAGACATCCTTACAGGCCTTAGTAAGAAACCTGTCACTTTGTCATGGGAAGACAGCAGTTGCTCTAGGGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGAGAGTACCCCTAAATTTTGATGACAAATCGGGTTTGTGGTATCTCGAGAGGGAATTGCCTGAAGGACGCTATGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAATAAAGATGAGCTTGTAACTGCTCCCAACAAAGATGGTCATGTCAACAATTTCATTCAAATCCTTGATAATAGCAGCAGTGGTCGTGTTTCCCTTCGGGAGAGATTCAGTTCTGATGATCCTGATCTTACACCGGAGGAACGACTGAGAATAAAGGAGTTTCTTGAAGCTTGTCCTGACGAGGATCTGTAA 900 0.4267 MTEAMGVVLTYRHELGMNYNFIRPDLIVGSCPQTPDDVEKLHRIGVKTIFCLQQNPDLEYFGVDIKAIQEYAKAHDVQHLRAEIRDFDAFDLRMRLPAVVSKLYKAINSNGGVTYIHCTAGLGRAPAVATAYMFWALGYTFKEAHTLLQSKRECFPKLDAIKSATADILTGLSKKPVTLSWEDSSCSRVEISGLDIGWGQRVPLNFDDKSGLWYLERELPEGRYEYKYIVDGEWTCNKDELVTAPNKDGHVNNFIQILDNSSSGRVSLRERFSSDDPDLTPEERLRIKEFLEACPDEDL 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7539g00001 299 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 172 262 - -
Vium7539g00001 299 Pfam Dual specificity phosphatase, catalytic domain 71 155 IPR000340 GO:0008138|GO:0016311
Vium7539g00001 299 CDD E_set_AMPKbeta_like_N 176 257 - -
Vium7539g00001 299 ProSiteProfiles Dual specificity protein phosphatase domain profile. 18 174 IPR020422 GO:0006470|GO:0008138
Vium7539g00001 299 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 94 152 IPR000387 GO:0016311|GO:0016791
Vium7539g00001 299 Gene3D Protein tyrosine phosphatase superfamily 11 290 IPR029021 -
Vium7539g00001 299 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 297 - -
Vium7539g00001 299 SMART dsp_5 18 167 IPR020422 GO:0006470|GO:0008138
Vium7539g00001 299 CDD DSP_laforin-like 17 163 IPR045204 GO:0019203
Vium7539g00001 299 Pfam Glycogen recognition site of AMP-activated protein kinase 176 260 IPR032640 -
Vium7539g00001 299 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 158 IPR029021 -
Vium7539g00001 299 SUPERFAMILY E set domains 175 257 IPR014756 -
Vium7539g00001 299 Gene3D Immunoglobulins 172 262 IPR013783 -
Vium7539g00001 299 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 11 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7539g00001 Vium-Chr7539 616 13093 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7539g00001 17 299 Protein tyrosine phosphatase (PTP) family AT3G52180 67.254 8.14e-148 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7539g00001 - - vum:124845419 616.69