Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7538g00002 ATGAGAGAGGGGCTGAGATCGCGGGCGCGATTGGGGGCGGTTTCTGGAGGCGAAGAAGTTGTTAGCAAGAGAAAAGTTGTTGTGAAGAGCGAGGCTGTTGCTAAGGATGGTGAGGGTTTGGAGGTGCAGAACTCAACTATTGAGAAGAAGGATGAAGTTGCACGTGATGTTAAAGAAGAATGTGGCTTTGATTTGAATGTGAGTGCAAGTGGAGAGGTTGACTTGGAAGAGAATGGGAGTGGTAGGGGTTGTTTTAGTGGTGGGGGTGATACTGTAGTAGCTGAGGTAGATAAGAAGGCAAAGAAGGAGCAAGGTTCAAATAATGAGGGACTGGTTGGGGGTCGAGTGTTGCGCTCAAGGTCTAAGGGGGGGAAGGATAGAAGAGTGTATTATGGAGAGAATGAGGATGTTGTTTCTGAGAGTGATAGAGAATGTAGTGGGGTTGAGAGTGTGAAAGTTAAGACGGAATGTGAAGAAGCTGGTGAGTTTTTGGGCGATAGTTATGAGAATGAAAAAGCTAAGGTGAAGAATGCAGGGAATGGAACGGGGAATTTGAAACGGAAGCGTGGGCGGCCTCCCAAAATAAAGTTGGAAGTGGAAGATCAACCAGTTCATCAGTTGCCACGTAAGCGTGGAAGACCCCCTCTTGCCAACAAACAAAACCATGTGGTGGTGCCTAATAGAAAAGAAAAGGCTGCCCTTCGAAAAGATAAAAAGGGTTTAACTATGAGACATGATGCTAATGTGAATGCAATTGATGATGCTGATTCAAGTAAATCTGCTGGGGATGAGTTAGAAAAGAAGGAAGTCTCTCCTGTCAAGAAGTCTAAATTTACTAAGGCTTTGGAAACTGGCAACAATGTGGTGGCCTCACCAGTAAGATCAAAAACTGAGAATGCACTTGTCACTGAGAAAAGTGGAAGAAATAGAGTTAAGCAGTTAGTGAGGGATCAAATAAAGGAAATTCTCTCAGCTGCCGGCTGGACAGTTGACTATAGACCTAGGAATGGTAGAGAGTACCATGATGCAGTTTATGTTAGTCTGGACGGACACACACACTGGTCAATCACCTTGGCCTACAAAAGGCTTAAAGAGTATTATGAAGCTGGTAATGGTGAAGGTAAGGCATATGGGCCAGGCTTCAAATTTACACCAATAGCAGCAGAGGATTTCCAAATACTCACTAAGGTAATTAAAAAGCAAAGAAATGGGAAAGTTAAATCAGTAAAGAAAGGGGGAAAGGGTGGGAACAAAAACAAAGAAAGGTCAGGTTCTGGTGCAGCCGTGGGTAAGTCAGTGAAGAGGAAAATGAAAAGGAAACGGTCACCTGGAGACATAGATTCTATGTCACCGAACAGGATGCCAGTTCTTGTGAGGGATCATAAGCGACACAAAACACAAAATAAGCTGCGAAGTGGTCCATTGGTTCGTAATGCTAAGGAGATAGATTCAGAAACTGAGGGATATGTACTGTACAGTGGAAAAAGAACTTTGCTTGCCTGGATGATTGATTTGGGCACAGTCCTTCTAAATGGGAAGGTTCATTATAAGGCACCCGAAGATAAAAGTGCTGCACTGGAGGGTAAGATCACAGGAGACGGCATTCATTGTGGCTGCTGTGATAAAATCATTACAATTTCAGAATTTGAAGTTCATGCAGGAAGAAAATTTGCTGATCCCCTTCAAAATATATATGTGGAGGAAGGAAAGTCTCTTTTACAGTGTTTGCTAGATTCGTGGAATAAGCAAGATGAATCTGAACGTCATGGTTTTCATTTTGTTGATGTTGCGGGTGAGGATCCGAATGATGATACTTGTGGGGTCTGTGGAGATGGTGGAGACCTGATATGTTGTGATGGTTGCCCGTCAACATTCCATCAAGACTGCTTGGATATACAAAAGTTTCCATCTGGTGATTGGCACTGCATTTATTGCTGTTGCAAATTTTGTGGGTCAGTTAATGGATGTTCAGACCAAAAGGATAGTGATGATGATATTGCTGTGTCAAAATTACTCACGTGCCGACTATGTGAGAAAAAATATCACAGATCCTGCATTGAGGGAAATGATTGCAATACTACTGATTACAGTGATGTGATCTTTTGTGGAAACAGATGTCAAGAGTTATCTGAGGGACTTGAAATGCTCCTGGGGGTTAGACATGAAATTGAAGATGGGTATTCCTGGACTTTTATTAGGCGGTCAGAGGCTGGCATTGATGCTTCTCAGATAAAACCTCATATGGTTGAATGTAATTCTAAGCTCGCTGTTGCATTATCAATAATGGATGAGTGCTTCATGCCATATATTGATCATAGAAGTGGGGTCAATCTGATCCACAGTATTCTGTATAACCGTGGGTAA 2364 0.4277 MREGLRSRARLGAVSGGEEVVSKRKVVVKSEAVAKDGEGLEVQNSTIEKKDEVARDVKEECGFDLNVSASGEVDLEENGSGRGCFSGGGDTVVAEVDKKAKKEQGSNNEGLVGGRVLRSRSKGGKDRRVYYGENEDVVSESDRECSGVESVKVKTECEEAGEFLGDSYENEKAKVKNAGNGTGNLKRKRGRPPKIKLEVEDQPVHQLPRKRGRPPLANKQNHVVVPNRKEKAALRKDKKGLTMRHDANVNAIDDADSSKSAGDELEKKEVSPVKKSKFTKALETGNNVVASPVRSKTENALVTEKSGRNRVKQLVRDQIKEILSAAGWTVDYRPRNGREYHDAVYVSLDGHTHWSITLAYKRLKEYYEAGNGEGKAYGPGFKFTPIAAEDFQILTKVIKKQRNGKVKSVKKGGKGGNKNKERSGSGAAVGKSVKRKMKRKRSPGDIDSMSPNRMPVLVRDHKRHKTQNKLRSGPLVRNAKEIDSETEGYVLYSGKRTLLAWMIDLGTVLLNGKVHYKAPEDKSAALEGKITGDGIHCGCCDKIITISEFEVHAGRKFADPLQNIYVEEGKSLLQCLLDSWNKQDESERHGFHFVDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHQDCLDIQKFPSGDWHCIYCCCKFCGSVNGCSDQKDSDDDIAVSKLLTCRLCEKKYHRSCIEGNDCNTTDYSDVIFCGNRCQELSEGLEMLLGVRHEIEDGYSWTFIRRSEAGIDASQIKPHMVECNSKLAVALSIMDECFMPYIDHRSGVNLIHSILYNRG 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7538g00002 787 MobiDBLite consensus disorder prediction 402 452 - -
Vium7538g00002 787 ProSiteProfiles Zinc finger PHD-type profile. 603 648 IPR019787 -
Vium7538g00002 787 SMART AT_hook_2 208 220 IPR017956 GO:0003677
Vium7538g00002 787 SMART AT_hook_2 186 198 IPR017956 GO:0003677
Vium7538g00002 787 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 595 667 IPR013083 -
Vium7538g00002 787 CDD PHD1_AIRE 606 645 - -
Vium7538g00002 787 SUPERFAMILY FYVE/PHD zinc finger 595 646 IPR011011 -
Vium7538g00002 787 PANTHER PHD FINGER PROTEIN 12 298 787 IPR042163 GO:0003714|GO:0045892
Vium7538g00002 787 SMART PHD_3 647 707 IPR001965 -
Vium7538g00002 787 SMART PHD_3 605 646 IPR001965 -
Vium7538g00002 787 MobiDBLite consensus disorder prediction 99 127 - -
Vium7538g00002 787 MobiDBLite consensus disorder prediction 174 219 - -
Vium7538g00002 787 MobiDBLite consensus disorder prediction 193 208 - -
Vium7538g00002 787 Pfam Tify domain binding domain 528 577 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7538g00002 Vium-Chr7538 25504 29306 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7538g00002 184 787 PHD Transcription Factor Family AT5G36670 39.968 8.63e-139 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7538g00002 - - gmx:100784172 1055.05