Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7538g00001 ATGAGAGAGGGGCTGAGATCGCGGGCGCGATTGGGGGCGGTTTCTGGAGGCGAAGAAGTTGTTAGCAAGAGAAAAGTTGTTGTGAAGAGCGAGGCTGTTGCTAAGGATGGTGAGGGTTTGGAGGTGCAGAACTCAACTATTGAGAAGAAGGATGAAGTTGCACGTGATGTTAAAGAAGAATGTGGCTTTGATTTGAATGTGAGTGCAAGTGGAGAGGTTGACTTGGAAGAGAATGGGAGTGGTAGGGGTTGTTTTAGTGGTGGGGGTGATACTGTAGTAGCTGAGGTAGATAAGAAGGCAAAGAAGGAGCAAGGTTCAAATAATGAGGGACTGGTTGGGGGTCGAGTGTTGCGCTCAAGGTCTAAGGGGGGGAAGGATAGAAGAGTGTATTATGGAGAGAATGAGGATGTTGTTTCTGAGAGTGATAGAGAATGTAGTGGGGTTGAGAGTGTGAAAGTTAAGACGGAATGTGAAGAAGCTGGTGAGTTTTTGGGCGATAGTTATGAGAATGAAAAAGCTAAGGTGAAGAATGCAGGGAATGGAACGGGGAATTTGAAACGGAAGCGTGGGCGGCCTCCCAAAATAAAGTTGGAAGTGGAAGATCAACCAGTTCATCAGTTGCCACGTAAGCGTGGAAGACCCCCTCTTGCCAACAAACAAAACCATGTGGTGGTGCCTAATAGAAAAGAAAAGGCTGCCCTTCGAAAAGATAAAAAGGGTTTAACTATGAGACATGATGCTAATGTGAATGCAATTGATGATGCTGATTCAAGTAAATCTGCTGGGGATGAGTTAGAAAAGAAGGAAGTCTCTCCTGTCAAGAAGTCTAAATTTACTAAGGCTTTGGAAACTGGCAACAATGTGGTGGCCTCACCAGTAAGATCAAAAACTGAGAATGCACTTGTCACTGAGAAAAGTGGAAGAAATAGAGTTAAGCAGTTAGTGAGGGATCAAATAAAGGAAATTCTCTCAGCTGCCGGCTGGACAGTTGACTATAGACCTAGGAATGGTAGAGAGTACCATGATGCAGTTTATGTTAGTCTGGACGGACACACACACTGGTCAATCACCTTGGCCTACAAAAGGCTTAAAGAGTATTATGAAGCTGGTAATGGTGAAGGTAAGGCATATGGGCCAGGCTTCAAATTTACACCAATAGCAGCAGAGGATTTCCAAATACTCACTAAGGTAATTAAAAAGCAAAGAAATGGGAAAGTTAAATCAGTAAAGAAAGGGGGAAAGGGTGGGAACAAAAACAAAGAAAGGTCAGGTTCTGGTGCAGCCGTGGGTAAGTCAGTGAAGAGGAAAATGAAAAGGAAACGGTCACCTGGAGACATAGATTCTATGTCACCGAACAGGATGCCAGTTCTTGTGAGGGATCATAAGCGACACAAAACACAAAATAAGCTGCGAAGTGGTCCATTGGTTCGTAATGCTAAGGAGATAGATTCAGAAACTGAGGGATATGTACTGTACAGTGGAAAAAGAACTTTGCTTGCCTGGATGATTGATTTGGGCACAGTCCTTCTAAATGGGAAGGTTCATTATAAGGCACCCGAAGATAAAAGTGCTGCACTGGAGGGTAAGATCACAGGAGACGGCATTCATTGTGGCTGCTGTGATAAAATCATTACAATTTCAGAATTTGAAGTTCATGCAGGAAGAAAATTTGCTGATCCCCTTCAAAATATATATGTGGAGGAAGGAAAGTCTCTTTTACAGTGTTTGCTAGATTCGTGGAATAAGCAAGATGAATCTGAACGTCATGGTTTTCATTTTGTTGATGTTGCGGGTGAGGATCCGAATGATGATACTTGTGGGGTCTGTGGAGATGGTGGAGACCTGATATGTTGTGATGGTTGCCCGTCAACATTCCATCAAGACTGCTTGGATATACAAAAGTTTCCATCTGGTGATTGGCACTGCATTTATTGCTGTTGCAAATTTTGTGGGTCAGTTAATGGATGTTCAGACCAAAAGGATAGTGATGATGATATTGCTGTGTCAAAATTACTCACGTGCCGACTATGTGAGAAAAAATATCACAGATCCTGCATTGAGGGAAATGATTGCAATACTACTGATTACAGTGATGTGATCTTTTGTGGAAACAGATGTCAAGAGTTATCTGAGGGACTTGAAATGCTCCTGGGGGTTAGACATGAAATTGAAGATGGGTATTCCTGGACTTTTATTAGGCGGTCAGAGGCTGGCATTGATGCTTCTCAGATAAAACCTCATATGGTTGAATGTAATTCTAAGCTCGCTGTTGCATTATCAATAATGGATGAGTGCTTCATGCCATATATTGATCATAGAAGTGGGGTCAATCTGATCCACAGTATTCTGTATAACCGTGGGTCAAATTTCAATCGACTGAACTATAGTGGATTTGTTACTGCAATTCTAGAGAGAGGTGATGAGATGATTTGTGCTGCAACTATCAGGATCCATGGGAACCAACTAGCAGAGATGCCATTTATTGGAACCCGCTACATGTACAGGCGACAAGGAATGTGCCGTAGGCTTCTAAATGCCATTGAATTGGGACTCAGCTCTTTAAATGTTGAGTTATTAGTGATACCAGCTATCTCAGAGCTCAGAGAAACTTGGACTTCCGTTTTTGGGTTTGAGCCACTTGAATCAACAATCAAGCAAACCGTACATAATACAAATCTATTGGTATTTCCTCATGTAGATATGTTACAGAAGAAGATATCAAAACATGAATTGGCTGGTCATAATCCAATTCCTTCAGAAGCTGTCAATCTTGGAACCAATCAAATAGCAAACAATTGCAATGGAGTGCGATCATCTGGATCTGATTTGGTCAATTATATTGAGATTCCTCGCTGCCTTAATACATGCCAAATAAAGGACGAAGCCACATCTATTGAATCTGATTGTCATCTTCCTGAGGGTTCATTGAATAATGTACCTGACATTGCTAGCAACATTAATGATTATAGGCAATCTACTAAAGATGAGACATGTGAAGTTGTTTGTCACAAAGGTGATGAGAATCCAGTGATGGACAACACTATGAAAAATGCCTGCGAATATGTGACTGATACTTGTGGTGTAGCTGGAGATAGCCAGTTGAACAATGGCACGGTTCCTTACGAGGAAAGACTGTGTGTCACATCTTGTATTAACACTGAGGCTACAGAAGGACAATGTGTCAGTGTTTCGTTGGAGGTTGCTGAAAACTTACCTAATCATGTCGCAGTATCAAATGAAGTTATGTCAAATAACAAAAGTGCGGAAGACTCAGAACCCTGCGGTACAGAAAGTATTACAAGGGATTCAAAACTTTCTGCTGACTCTATTCACAAGGATTCATATATAGTTTCTGACAGTTGTGAACGGAGAAGTGACACTGATTGTGGTCAACCAAATTTCATAGGAACAGAAGAACAACGTGGTGAATTTATTAGTGTTTGTGGTTCTCATGGTAGACCCAATGGTGATTGTGCCTCTGGTGAAGGTGCTGCCGCCACTAACTTGTTGTTGCACCTTCCATCACATGTCGTGATCAATAACAAGCCTTGGGTGAAAGGGTCTTCAGAGTTACCTGAGCCTGATTTGGAGGTGGATCAAACTGAACAGAACAGTGCTCCCTCCCCATGGAGCCCTAACACCTGTGCATCTACTGGCAGTGCTTCTCGTGGTAGTACTGAGGGGATATTTTTGTCAAACCAAGCCAGTTGA 3711 0.4231 MREGLRSRARLGAVSGGEEVVSKRKVVVKSEAVAKDGEGLEVQNSTIEKKDEVARDVKEECGFDLNVSASGEVDLEENGSGRGCFSGGGDTVVAEVDKKAKKEQGSNNEGLVGGRVLRSRSKGGKDRRVYYGENEDVVSESDRECSGVESVKVKTECEEAGEFLGDSYENEKAKVKNAGNGTGNLKRKRGRPPKIKLEVEDQPVHQLPRKRGRPPLANKQNHVVVPNRKEKAALRKDKKGLTMRHDANVNAIDDADSSKSAGDELEKKEVSPVKKSKFTKALETGNNVVASPVRSKTENALVTEKSGRNRVKQLVRDQIKEILSAAGWTVDYRPRNGREYHDAVYVSLDGHTHWSITLAYKRLKEYYEAGNGEGKAYGPGFKFTPIAAEDFQILTKVIKKQRNGKVKSVKKGGKGGNKNKERSGSGAAVGKSVKRKMKRKRSPGDIDSMSPNRMPVLVRDHKRHKTQNKLRSGPLVRNAKEIDSETEGYVLYSGKRTLLAWMIDLGTVLLNGKVHYKAPEDKSAALEGKITGDGIHCGCCDKIITISEFEVHAGRKFADPLQNIYVEEGKSLLQCLLDSWNKQDESERHGFHFVDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHQDCLDIQKFPSGDWHCIYCCCKFCGSVNGCSDQKDSDDDIAVSKLLTCRLCEKKYHRSCIEGNDCNTTDYSDVIFCGNRCQELSEGLEMLLGVRHEIEDGYSWTFIRRSEAGIDASQIKPHMVECNSKLAVALSIMDECFMPYIDHRSGVNLIHSILYNRGSNFNRLNYSGFVTAILERGDEMICAATIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLNAIELGLSSLNVELLVIPAISELRETWTSVFGFEPLESTIKQTVHNTNLLVFPHVDMLQKKISKHELAGHNPIPSEAVNLGTNQIANNCNGVRSSGSDLVNYIEIPRCLNTCQIKDEATSIESDCHLPEGSLNNVPDIASNINDYRQSTKDETCEVVCHKGDENPVMDNTMKNACEYVTDTCGVAGDSQLNNGTVPYEERLCVTSCINTEATEGQCVSVSLEVAENLPNHVAVSNEVMSNNKSAEDSEPCGTESITRDSKLSADSIHKDSYIVSDSCERRSDTDCGQPNFIGTEEQRGEFISVCGSHGRPNGDCASGEGAAATNLLLHLPSHVVINNKPWVKGSSELPEPDLEVDQTEQNSAPSPWSPNTCASTGSASRGSTEGIFLSNQAS 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7538g00001 1236 MobiDBLite consensus disorder prediction 175 219 - -
Vium7538g00001 1236 MobiDBLite consensus disorder prediction 402 452 - -
Vium7538g00001 1236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 595 663 IPR013083 -
Vium7538g00001 1236 ProSiteProfiles Zinc finger PHD-type profile. 603 648 IPR019787 -
Vium7538g00001 1236 SMART AT_hook_2 208 220 IPR017956 GO:0003677
Vium7538g00001 1236 SMART AT_hook_2 186 198 IPR017956 GO:0003677
Vium7538g00001 1236 MobiDBLite consensus disorder prediction 1198 1236 - -
Vium7538g00001 1236 MobiDBLite consensus disorder prediction 1188 1236 - -
Vium7538g00001 1236 SUPERFAMILY FYVE/PHD zinc finger 595 646 IPR011011 -
Vium7538g00001 1236 SMART PHD_3 647 707 IPR001965 -
Vium7538g00001 1236 SMART PHD_3 605 646 IPR001965 -
Vium7538g00001 1236 MobiDBLite consensus disorder prediction 1079 1102 - -
Vium7538g00001 1236 Pfam Tify domain binding domain 528 577 IPR032308 -
Vium7538g00001 1236 MobiDBLite consensus disorder prediction 99 125 - -
Vium7538g00001 1236 PANTHER PHD FINGER PROTEIN 12 294 1110 IPR042163 GO:0003714|GO:0045892
Vium7538g00001 1236 MobiDBLite consensus disorder prediction 193 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7538g00001 Vium-Chr7538 15411 23710 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7538g00001 184 912 PHD Transcription Factor Family AT5G36670 42.181 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7538g00001 - - gmx:100784172 1610.89