Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7537g00020 ATGGTCGTAGAAACGGAAATCATCTGCCAGAAGAGCATTCCCATGCTGGACGTGAAGTACCACCTTTGCGTGGCGCAAGAACACGGTGTTAAGGTTGATGTTTCGCCGACCTCCAACGTTGTTCCCATCTTCGGTCACGTGAGGATTGCCACCGAATCTGTTTCTACGGAAACGACTCGTTTTGAATCTGCTGTGAGTTTGCCTGAGATGATTGGAGATTCAAGTTTAGAGGCTCCTGCTACTAAGTTTACACCAGATGTGCGATCTGGCTGTTGTGCTGATATTGGACCCAGGGGGTCTATGGATGATGAGCACATTCAGATAGATGATCTAGCTGCGCACCTTGGATTCAACTTTGAGCATCCTATGGCAAGTGCTTTTTATGCAGTTTTTGATGGGCATGGAGGGCCAGATGCAGCTGCCTTTGTTAAAAACAACGCTATGAGATTATTTTTTGAAGATGCTCATATGCTGCAATCATACGATGCTGATGCGCTTTTTCTGAAGAGGTTGGAAGATTCTCATCGAAAGGCGTTTTTGGGAGCAGACATTGCCTTGGCTGATGAACGAAGTGTTAGTAGTTCATGTGGAACAACGGCGTTGACTGCTCTTGTACTCGGGAGGTATTTGATGGTTGCTAATGCTGGGGACTGTAGAGCTGTTCTTTGTAAGCGAGGCGTAGCTGTTGATATGTCCCAAGATCACAGACCGAGTTATTTACCAGAACGCAGGAGAGTGGAGGAGATGGGTGGTTATATTGATGATGGGTATCTCAATGGTCATCTTTCTGTGACTCGTGCTCTTGGGGATTGGGAGTTGAAAAATGCACTTGGTTCTGTGTCGCCTCTTATTGCCGACCCGGATGTTCAGGTGGTCACATTGACAGAGGAGGATGAGTTCTTGATCATTGGTTGTGATGGTATTTGGGATGTACTGTCAAGCCAGGATGCTGTTAGTCTGGTGCGGCGTGGATTAAGAAGGCATGACGATCCTGAACAATGTGCCAGAGAGCTAGTTAAGGAAGCTTTGCGCCTACACTCCTCAGATAATCTTACTGCGATTGTTATCTGCTTGTCCCCTGTCCAGATTGTTGAGTCTTGTCTACCCCAAAGGCGAAGATTCAGATTTTGCTCCCTGTCTGAAGAGGCCCGGAACAGGTTGAGGAGCTTGCTAGAGGGAAACTGA 1185 0.4726 MVVETEIICQKSIPMLDVKYHLCVAQEHGVKVDVSPTSNVVPIFGHVRIATESVSTETTRFESAVSLPEMIGDSSLEAPATKFTPDVRSGCCADIGPRGSMDDEHIQIDDLAAHLGFNFEHPMASAFYAVFDGHGGPDAAAFVKNNAMRLFFEDAHMLQSYDADALFLKRLEDSHRKAFLGADIALADERSVSSSCGTTALTALVLGRYLMVANAGDCRAVLCKRGVAVDMSQDHRPSYLPERRRVEEMGGYIDDGYLNGHLSVTRALGDWELKNALGSVSPLIADPDVQVVTLTEEDEFLIIGCDGIWDVLSSQDAVSLVRRGLRRHDDPEQCARELVKEALRLHSSDNLTAIVICLSPVQIVESCLPQRRRFRFCSLSEEARNRLRSLLEGN 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7537g00020 394 ProSitePatterns PPM-type phosphatase domain signature. 127 135 IPR000222 GO:0043169
Vium7537g00020 394 Pfam Protein phosphatase 2C 98 350 IPR001932 -
Vium7537g00020 394 Gene3D - 74 362 IPR036457 -
Vium7537g00020 394 SUPERFAMILY PP2C-like 84 360 IPR036457 -
Vium7537g00020 394 FunFam Probable protein phosphatase 2C 22 73 361 - -
Vium7537g00020 394 ProSiteProfiles PPM-type phosphatase domain profile. 88 358 IPR001932 -
Vium7537g00020 394 PANTHER PROTEIN PHOSPHATASE 2C 72 356 IPR015655 GO:0004722|GO:0006470
Vium7537g00020 394 SMART PP2C_4 78 356 IPR001932 -
Vium7537g00020 394 CDD PP2Cc 87 358 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7537g00020 Vium-Chr7537 115178 117539 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7537g00020 1 393 PP2C-type Phosphatase Gene Family AT1G48040 57.789 2.39e-147 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7537g00020 K14803 - gmx:100798957 670.618