Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7537g00011 ATGACAACCGCGGAGTCAGCTCCTGCGGGGCTTGGCCCTAGATATGCACCCGATGACCCTACTCTTCCACAACCTTGGAAGGGATTGATTGATGGCAGCACTGGTTTGTTGTATTATTGGAATCCCGAAACTAATGTTACCCAATATGAAAAACCTGCCCCAGTAACACCACCCTTGCCTGCACCTGTGGCTTCTGCACCGAACTTGGCACCTATACCTGTGACTCACACAATGCAGGTTGGTGGGATGGGGCCGCAGCATGGACAGCCCTTAATGCAAGGGCAACCCTCGCAACAGCAGGTAGGTCACCTTGCCCAACAGCATGGGCAATCTATGCTACCTCAGCAACAGCAGCAGAGTCCCCATATGGTGCAAACCACTCAGCAGAACCCCTCTCAGGGTGCTCAGTCTGTGCCGCAGCAGAACTCACTGATGCCACAGTCAGTGCCGCAGCCAGGGTTACATCAAGCCAGACAGCAAATGATGCAGCCCCAGGGGCAGCAAATGTTGCAGCAGCCTCAAGGACAGCAAATTCAACATCAGATACCGCCACATGCAATCCATTCCCAGCATTTTGGGCAAGGAATGCCTCAGGATCATGGCTCACATATTGCACCTCCACAAGTACATCAGTTTCCTACCCAAAACATGCACTATATGTCATATCAGCAAAACATCATTACACCCAGGCAACCAAACTCTCAACACATTCAGCCAAACACTGTCTCACCTGGGCAACCTAACCCCCAACAGGTTCAGCATAACATGCATGCTCAACCCTTCGAAAATCAACAAACAACATTTCCAAAGGTAGAGGAAGCGGAGTTTAAAAATGGAAGCCAGGTTGGACTTTCACCATCCCAGTATCCGCCGAGGAGTACCTTGCCTGCTCAGAATAATCAGAACCTTCCTCCTGACACAGCTTTTGATCAAATGCCTAATGTAGGTGTCAATGCTGGTCAGCCTCAGCAATTTAGGACTGCCTTATCAGGCAGTGTGCAGAAGTCGCCATCTGCAATGCCGTTGCAGCAGGGTGGATCTGTTTTATATTACCAACATGGTCCTAACTTTCATAAGCAGATGAGCCCAGGAATGATGCATGGTCATCCATCCAATGTCCATCCTGCTGGCCAAAAAATGAGTCAGGAGGACAATTCACGTAGCAGAGAAGGAAATGAATATTACTATAATTCTAATAAAGATATGTCCACAATGGGTCGTCGGCAACCAGATATGACTCAAATACCAGTTCCAAGAAATCAGCAGGATATGAGGATCGGCAATACTCCTTTTCAAAACGTAATGCCAAGTGGGAATGGAAGTGGTATTGCTGGGAATGCTATGCCTAGCATGTTTGTTCCTCCAATGGGAGGACCTTCACCTCTTTCTAATAATGCTTTAATGAGACCTTCTTACATGGGATCTTCTGATGCAAGTGATCTTTCACCGGCTGAAATTTACTGCCAGCAACATGAAGTTACAGCAACGGGTGGTGACATTCCCCCTCCTTTCATGACATTTGATGCTACTGGATTCCCTCCAGAGATATTGAGAGAGATATATTCTGCTGGCTTCTCAAATCCAACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAGGGTAGAGACATAGTAGCAATTGCCAAAACTGGCTCTGGGAAAACATTGGGTTACTTAATTCCTGCCTTCATTCTTCTTAGACAGCGACACAATAATTCTCTGAATGGCCCCACTGTCTTGGTTTTGGCTCCAACACGGGAACTTGCAACACAGATCCATAATGAGGTTATCAAGTTTGGTCGATCATCACGAGTCTCTTGCACGTGCTTGTATGGTGGAGCACCTAAAGCCCTTCAACTAAAGGAGTTAGATCGGGGAGCAGACATTGTTGTTGCCACACCTGGTCGGCTCAATGATATACTTGAAATGAAGAAAATTGACTTCGGGCAAGTTTCACTACTTGTGCTTGATGAGGCTGACAGAATGCTTGACATGGGTTTTGAGCCTCAAATCCGGAAGATTGTGGATGAGATTCCTGCACGCAGACAAACTCTCATGTACACAGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCTAGTGAACTTCTTGTGAATTCTGTCCAGGTTAACATTGGAAGTGCAGATGAGCTTGCTGCAAATAAAGCCATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAGCAGAGGCGTTTGGAACAGATCCTCAGATCCCAAGAACGAGGTTCGAAGGTCATAATATTTTGCTCCACGAAGAGGTTATGTGATCAGCTAGCTCGTAATATTGGCCGCACTTTTGGGGCTGCTGCAATTCATGGAGATAAGTCTCAAGGTGAGAGAGACTGGGTTTTAAGTCAGTTCCGGACTGGGAAGTCACCAATTCTGGTTGCCACTGATGTTGCAGCTCGTGGGCTTGATATTAAGGATATAAGGGTGGTAATAAATTATGATTTCCCCACTGGAATTGAGGACTATGTGCACCGTATAGGAAGAACTGGAAGAGCAGGTGCTACTGGAGTGTCATATACCTTTTTTTCTGAGCAGGACTGGAAACACGCTGGTGATTTAATCAAAGTTTTGGAGGGTGCTAATCAGCATGTGCTTCCAGAGTTAAGACAGATGGCTTTGCGTGGGCCATCAAACTTTGGAAAGGAACGGGGTGGGATGAGTAGGTTTGATTCTGGTGGTGGGCGTTGGGAGACTGGTGGTCGTGGTAGTATGAGAGATGGTGGCTTTGGTGGTCGTGGTGGAATGAGGGATGGTGGCTTTGGTGGTCGTGGGGGTGGCATGAGGGATGGTGGTTTTGGGGGGCGTGGCAGTGGCATGAGGGATGGTGGCTTTGGTGGTCGAGGTGGAGGCCTGAGGGATGGAGGATTTGGTGGACGTGGTGGTGGTGGTTTTAGTGGACGTGGTGGCCCGAGGGATGGAGCTGGTGGGAGAGGTGATTTCTTTCCTGGTAGGGGCAACAGGGGTAGGGGATCTAGTGGTCTTCGTGGTGGTCATGGTGGTTGGGGTAGGGGTGAACGTGGTATGGATGACCGTGGACAGGGGCGTGGACGTGGCCGATTTGACAACAGAAGGGATGTTTCTTACAAAAGTAGAGGCAGAAGTTATAGTCGAAGCCCAGAAAGAGTCCGAACATGGGATTATAGTAGCAGTAGCAGAAGTCGTAGTAGAAGCAGGAGTTGGAGCAGGGATAGAAGTCGAAGTAGAAGTAGAAGTCGCAGCTGGTCTCGTGGCCGAAGTTACAGCCGAAGCCGTACCCGCAGCCGGAGCCGGAGCCGGAGTTATGACAGGCGGGATAGGTCAGTTCAACAGCTTCCTGATCGAAAGGATAGGCCACACGAAGTGGGAACTTCTGATCCAAGAATGCTTCCCTTGTCTCCTGGTCCTGGCAAACAGGAGAATTCCTCTTTGGGAAGTGAGCAAGGGCAGCAGCAATCTGTTGTTGGTAGCTCTGATCCAGGGAATCCAGAAGCTGTACCAGACCTTAGTCACGAATCAGCTTCTGGTGTTTAG 3543 0.4869 MTTAESAPAGLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPAPVTPPLPAPVASAPNLAPIPVTHTMQVGGMGPQHGQPLMQGQPSQQQVGHLAQQHGQSMLPQQQQQSPHMVQTTQQNPSQGAQSVPQQNSLMPQSVPQPGLHQARQQMMQPQGQQMLQQPQGQQIQHQIPPHAIHSQHFGQGMPQDHGSHIAPPQVHQFPTQNMHYMSYQQNIITPRQPNSQHIQPNTVSPGQPNPQQVQHNMHAQPFENQQTTFPKVEEAEFKNGSQVGLSPSQYPPRSTLPAQNNQNLPPDTAFDQMPNVGVNAGQPQQFRTALSGSVQKSPSAMPLQQGGSVLYYQHGPNFHKQMSPGMMHGHPSNVHPAGQKMSQEDNSRSREGNEYYYNSNKDMSTMGRRQPDMTQIPVPRNQQDMRIGNTPFQNVMPSGNGSGIAGNAMPSMFVPPMGGPSPLSNNALMRPSYMGSSDASDLSPAEIYCQQHEVTATGGDIPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLIPAFILLRQRHNNSLNGPTVLVLAPTRELATQIHNEVIKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVDEIPARRQTLMYTATWPKEVRKIASELLVNSVQVNIGSADELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARNIGRTFGAAAIHGDKSQGERDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQMALRGPSNFGKERGGMSRFDSGGGRWETGGRGSMRDGGFGGRGGMRDGGFGGRGGGMRDGGFGGRGSGMRDGGFGGRGGGLRDGGFGGRGGGGFSGRGGPRDGAGGRGDFFPGRGNRGRGSSGLRGGHGGWGRGERGMDDRGQGRGRGRFDNRRDVSYKSRGRSYSRSPERVRTWDYSSSSRSRSRSRSWSRDRSRSRSRSRSWSRGRSYSRSRTRSRSRSRSYDRRDRSVQQLPDRKDRPHEVGTSDPRMLPLSPGPGKQENSSLGSEQGQQQSVVGSSDPGNPEAVPDLSHESASGV 1180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7537g00011 1180 Pfam DEAD/DEAH box helicase 529 699 IPR011545 GO:0003676|GO:0005524
Vium7537g00011 1180 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 505 533 IPR014014 GO:0003724
Vium7537g00011 1180 MobiDBLite consensus disorder prediction 1013 1051 - -
Vium7537g00011 1180 MobiDBLite consensus disorder prediction 90 181 - -
Vium7537g00011 1180 MobiDBLite consensus disorder prediction 1102 1127 - -
Vium7537g00011 1180 MobiDBLite consensus disorder prediction 1052 1066 - -
Vium7537g00011 1180 FunFam ATP-dependent RNA helicase RhlB 714 886 - -
Vium7537g00011 1180 MobiDBLite consensus disorder prediction 279 319 - -
Vium7537g00011 1180 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 470 883 - -
Vium7537g00011 1180 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Vium7537g00011 1180 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 739 883 IPR001650 -
Vium7537g00011 1180 MobiDBLite consensus disorder prediction 1082 1101 - -
Vium7537g00011 1180 MobiDBLite consensus disorder prediction 280 319 - -
Vium7537g00011 1180 MobiDBLite consensus disorder prediction 231 252 - -
Vium7537g00011 1180 MobiDBLite consensus disorder prediction 363 392 - -
Vium7537g00011 1180 Pfam Helicase conserved C-terminal domain 736 844 IPR001650 -
Vium7537g00011 1180 Gene3D - 714 885 IPR027417 -
Vium7537g00011 1180 SMART helicmild6 760 844 IPR001650 -
Vium7537g00011 1180 MobiDBLite consensus disorder prediction 1067 1081 - -
Vium7537g00011 1180 CDD DEADc 516 710 - -
Vium7537g00011 1180 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 576 859 IPR027417 -
Vium7537g00011 1180 SUPERFAMILY WW domain 15 53 IPR036020 GO:0005515
Vium7537g00011 1180 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Vium7537g00011 1180 Gene3D - 481 713 IPR027417 -
Vium7537g00011 1180 MobiDBLite consensus disorder prediction 1139 1162 - -
Vium7537g00011 1180 FunFam probable ATP-dependent RNA helicase DDX17 471 713 - -
Vium7537g00011 1180 Pfam WW domain 22 52 IPR001202 GO:0005515
Vium7537g00011 1180 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 536 710 IPR014001 -
Vium7537g00011 1180 SMART ww_5 21 54 IPR001202 GO:0005515
Vium7537g00011 1180 CDD WW 23 54 IPR001202 GO:0005515
Vium7537g00011 1180 MobiDBLite consensus disorder prediction 886 1180 - -
Vium7537g00011 1180 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 656 664 IPR000629 -
Vium7537g00011 1180 SMART ultradead3 524 727 IPR014001 -
Vium7537g00011 1180 MobiDBLite consensus disorder prediction 1 25 - -
Vium7537g00011 1180 CDD SF2_C_DEAD 724 853 - -
Vium7537g00011 1180 MobiDBLite consensus disorder prediction 79 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7537g00011 Vium-Chr7537 57165 64856 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7537g00011 503 882 Eukaryotic Initiation Factors Gene Family AT3G19760 33.071 3.46e-62 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7537g00011 K12823 - gmx:100807830 1455.65