Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7529g00007 ATGATGGGGTCTGAGATTTCATCCACTGTTGTTGAAAAGCTCAACAATTCACAAGATTTATCAAGAAAGAGGTCTTGTGCTAATAAACAGAAACAAGAAAAAATCCCTAAGAGGATTCGCAAGGCTGAAAGAGAGAAAGAGAAGCGTGAACAGTTGAATGAACTCTTTCTTGGTCTTGCTGATACACTCGATCTTAAAGAACAGAACAATGGAAAAGCTTCTATATTGAGGGAATCCATCAGATTGCTGAAAGACTTGTTCAGTCAGATCGAGTCCTTAAAAAAGGACAGTGTATCTCTGTTGTCAGAGACTCACTATGTGACTAGGGAGAAAAATGAGATGTTGGAGGAGAATTGTGTTCTGAAAAGTCAAATTGAGAAACTTGCAGGTGAAATAGAAGCAAGAGTAGTCCAATGTGGACATAACATGATGAATCCATTTCCAGAACCAGAAAAGATTACAGAGTTTTCAGGGGAGAATCTGCAATTGTCCAATACAGAAGCAGCAGTGCAGCAAGGACATGCAGTTTTGGTTGTCCCCATAAGTACTAATCATGGTCCTCATAATGTTGTTGAGCAGATTGCAAAACCCAAATCAACTATTACTAAACCACATCCCAGGTATCCTACTCAAATGGATTCATGGCCACTGCAGTTGCTTGCAGAGCAACCAACTTCAAATTAA 684 0.3947 MMGSEISSTVVEKLNNSQDLSRKRSCANKQKQEKIPKRIRKAEREKEKREQLNELFLGLADTLDLKEQNNGKASILRESIRLLKDLFSQIESLKKDSVSLLSETHYVTREKNEMLEENCVLKSQIEKLAGEIEARVVQCGHNMMNPFPEPEKITEFSGENLQLSNTEAAVQQGHAVLVVPISTNHGPHNVVEQIAKPKSTITKPHPRYPTQMDSWPLQLLAEQPTSN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7529g00007 227 PANTHER TRANSCRIPTION FACTOR BHLH47 2 226 - -
Vium7529g00007 227 Gene3D - 32 107 IPR036638 GO:0046983
Vium7529g00007 227 MobiDBLite consensus disorder prediction 24 46 - -
Vium7529g00007 227 Coils Coil 76 96 - -
Vium7529g00007 227 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 36 99 IPR036638 GO:0046983
Vium7529g00007 227 MobiDBLite consensus disorder prediction 1 23 - -
Vium7529g00007 227 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 36 86 IPR011598 GO:0046983
Vium7529g00007 227 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7529g00007 Vium-Chr7529 57865 59578 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7529g00007 2 223 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 41.564 1.34e-49 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7529g00007 - - gmx:100782436 211.846