Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7529g00006 ATGATGGGGTCTGAGATTTCATCCACTGTTGTTGAAAAGCTCAACAATTCACAAGATTTATCAAGAAAGAGGTCTTGTGCTAATAAACAGAAACAAGAAAAAATCCCTAAGAGGATTCGCAAGGCTGAAAGAGAGAAAGAGAAGCGTGAACAGTTGAATGAACTCTTTCTTGGTCTTGCTGATACACTCGAGGTAACAGATCTTAAAGAACAGAACAATGGAAAAGCTTCTATATTGAGGGAATCCATCAGATTGCTGAAAGACTTGTTCAGTCAGATCGAGTCCTTAAAAAAGGACAGTGTATCTCTGTTGTCAGAGACTCACTATGTGACTAGGGAGAAAAATGAGATGTTGGAGGAGAATTGTGTTCTGAAAAGTCAAATTGAGAAACTTGCAGGTGAAATAGAAGCAAGAGTAGTCCAATGTGGACATAACATGATGAATCCATTTCCAGAACCAGAAAAGATTACAGAGTTTTCAGGGGAGAATCTGCAATTGTCCAATACAGAAGCAGCAGTGCAGCAAGGACATGCAGTTTTGGTTGTCCCCATAAGTACTAATCATGGTCCTCATAATGTTGTTGAGCAGATTGCAAAACCCAAATCAACTATTACTAAACCACATCCCAGGTATCCTACTCAAATGGATTCATGGCCACTGCAGTTGCTTGCAGAGCAACCAACTTCAAATTAA 693 0.3954 MMGSEISSTVVEKLNNSQDLSRKRSCANKQKQEKIPKRIRKAEREKEKREQLNELFLGLADTLEVTDLKEQNNGKASILRESIRLLKDLFSQIESLKKDSVSLLSETHYVTREKNEMLEENCVLKSQIEKLAGEIEARVVQCGHNMMNPFPEPEKITEFSGENLQLSNTEAAVQQGHAVLVVPISTNHGPHNVVEQIAKPKSTITKPHPRYPTQMDSWPLQLLAEQPTSN 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7529g00006 230 Coils Coil 79 99 - -
Vium7529g00006 230 MobiDBLite consensus disorder prediction 24 46 - -
Vium7529g00006 230 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 37 110 IPR036638 GO:0046983
Vium7529g00006 230 MobiDBLite consensus disorder prediction 1 23 - -
Vium7529g00006 230 Gene3D - 32 111 IPR036638 GO:0046983
Vium7529g00006 230 Pfam Helix-loop-helix DNA-binding domain 37 89 IPR011598 GO:0046983
Vium7529g00006 230 PANTHER TRANSCRIPTION FACTOR BHLH47 2 229 - -
Vium7529g00006 230 MobiDBLite consensus disorder prediction 1 46 - -
Vium7529g00006 230 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 36 89 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7529g00006 Vium-Chr7529 57862 59578 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7529g00006 2 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 41.463 5.52e-48 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7529g00006 - - gmx:100782436 206.838