Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7529g00002 ATGGAGGGCGGTGATGATTTCCACCACCACCACCACCACCATCACCACCACCAACAACATCAACACCGACAAAACTTCCCATTCCAACTCCTCGAGAAGAAAGAAGACCAAGACCCCTCTTCCTGCTCCACTTCCTCCCCATACCCTTCCCTAGCCATCTCGGCCGAACCCTCCACCTCCAACTCCACCCGATCCAACAACACCACCACCACCACCCTCCTCCCCACACCCTCCGAAGCCTCCCCCAAAAAGCCACCACCCAAAAGAACCTCCACCAAAGACCGCCACACCAAAGTCGACGGCCGCGGTCGTCGAATTCGAATGCCTGCTCTCTGCGCCGCCAGAGTTTTCCAGCTCACGCGGGAGCTCGGACACAAGTCCGACGGCGAGACCATAGAGTGGCTCCTCCAGCAGGCCGAGCCTGCCGTCATCGCCGCCACTGGCACCGGCACCATCCCCGCTAATTTCACGTCCCTTAACATATCTCACCGGAGCTCGGGCTCCTCCATGTCCGTCCCGTCCCAGCTGCGATCCAACTACTTCAATTCAAACTTTTCTCTCCAACCCAGGAGAAGCCTATTCCTTGAAAACACCAATACTTCCACGACGCTCCTCAATTTTCAATCCAACAACCCCATCTCCACTTCCATTTTCCAACCCAAGCACGAATTGCGCGACTCGTCGTCCCTGGACCTGTCCTCGGAGAACAACGAAGAGGGTTTGGGAAGGAAAAGACGACCCTCGGAGCAAGACCTATCCTCGACCATGCAACACCAAGTCGGAAGCTATTTGATGCAATCAAGCTCCTCGGGGACAATTCCGGCGAGTCATGCTCAAATTCCGGCGAATATATGGATGTTGGCGAATTCCAATAGCCAAGGTGTGAGTGGTGAAGCTCCTCTTTGGACGTTCCCCGGTGTGAGTAACAGTGCCTTGTATAGAGGAAACATGTCAAGTGGGTTGCATTTCATGAACTTTCCCACGCCAATGGCACTTTTACCAGGTCAACAATTAGGGTCTTCTGGGATTGGTGGGAACATCAACGAAGGGCATTTGAGCATGCTTTCGGGGCTTAACCCTTACCGGACAGTGATCGGCGTTTCGGAATCTCAGGCAAGTGAGTCACAGTCACATCACGGTGGAAGCGAGGATCGGCATGATGATAACTAA 1170 0.5427 MEGGDDFHHHHHHHHHHQQHQHRQNFPFQLLEKKEDQDPSSCSTSSPYPSLAISAEPSTSNSTRSNNTTTTTLLPTPSEASPKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISHRSSGSSMSVPSQLRSNYFNSNFSLQPRRSLFLENTNTSTTLLNFQSNNPISTSIFQPKHELRDSSSLDLSSENNEEGLGRKRRPSEQDLSSTMQHQVGSYLMQSSSSGTIPASHAQIPANIWMLANSNSQGVSGEAPLWTFPGVSNSALYRGNMSSGLHFMNFPTPMALLPGQQLGSSGIGGNINEGHLSMLSGLNPYRTVIGVSESQASESQSHHGGSEDRHDDN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7529g00002 389 MobiDBLite consensus disorder prediction 369 389 - -
Vium7529g00002 389 MobiDBLite consensus disorder prediction 1 100 - -
Vium7529g00002 389 MobiDBLite consensus disorder prediction 40 78 - -
Vium7529g00002 389 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 11 379 IPR005333 GO:0003700
Vium7529g00002 389 ProSiteProfiles TCP domain profile. 92 146 IPR017887 -
Vium7529g00002 389 Pfam TCP family transcription factor 90 255 IPR017887 -
Vium7529g00002 389 MobiDBLite consensus disorder prediction 237 251 - -
Vium7529g00002 389 MobiDBLite consensus disorder prediction 224 257 - -
Vium7529g00002 389 MobiDBLite consensus disorder prediction 86 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7529g00002 Vium-Chr7529 27429 29126 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7529g00002 68 388 TCP Transcription Factor Family AT3G47620 44.048 8.19e-64 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium7529g00002 TCP 9.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7529g00002 - - gmx:100809154 523.857