Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7521g00004 ATGGGTCTGCGTCATCTCTCAAACTTGATGACGCCATTGCCAGAACTCTGTACCTCACTTTGTCATGTGAGAAAGTCCGAGCCTTGTTCATCAGATTGCAAAGTTTGCCTCAGGATCTGCCTCACCAATCCCGAAAACCCTAATTATGATTCTCCTCCACCGCCGCCGCCGCCACAACTTCCCCCTTTCATTCTAAATAACGACGGCGCAGATGAATCAAGCAGCCACAAAATAGCCACCTATTTGTTCCTTGCTCTTGCTATTTTAACCGTTGCTTTCTTTGTCGTTTGTTGTCGCACCATCTATACCAGGTTCAGCTCGAGGAGGAGGGAACCATCAAGGCACCAGCCAGAGAACACCGCCGATGATGATTTTGTTGATGAAGAGCATGGACCTGTGGTGGATCACCCCATATGGTATATCCGCACCCTCGGCCTTCAGCAATCGATTATCAATGCCATCACAGTTTGTAGGTATAAGAAAGGAGAGGGCTTGATTGAAGGAACCGAGTGTGCGGTTTGCTTGAGTGAGTTTGAAGAGGATGAAAATCTCAGACTTTTGCCTAAATGCTATCATGCTTTTCATTTACCCTGTATTGATACCTGGCTTAGGTCTCATACCAACTGTCCCATATGCCGGGCTCCCATTGTTTCTGACCTTGCAACCGCTAGGTCGGAGTCTAGTTTTGTTGATTCAAATTCCTTTGGACATACCCATGTGGAAATTTTGGAAAATAGTGCTCCTGATTCTGAATTAGGAAATAGGGCAGAGGAAGAGGTCCAAGTGGAGGCTGAAGATGGATTTAGGGTTTGTGAAACTGAAATCCCAGTTGAAGAGGTGTCAGGCATTCTTCCTAGAAGATCTGTTTCTCTGGATTCCTTTTCTGTTGCAAATATTAATCGTGCTCTTGCAACATTGGTATCTAATGCTAACTCAAAAAGAGTGCTGGGAGGCGTGGATGATGCTGCTGCTTCTTCTTCTTCTTCTTCTTCAAAGGTGGCTTCTGGAAGCGATTTGGCAACCACTTCCAAAGGCAGCTCCTCTTTCAGGTTAACTAGGTATCTGCCGGGTGCTCCTGGTTCTTCAATGAAAAGTTCACAGTCCTATAATGGAAAGTACCTTCTGTCCTGGTACGGTCGCAATCAGAAGAAGCCAAATGCTCCTCTGAGAAGCTTTTAG 1179 0.4589 MGLRHLSNLMTPLPELCTSLCHVRKSEPCSSDCKVCLRICLTNPENPNYDSPPPPPPPQLPPFILNNDGADESSSHKIATYLFLALAILTVAFFVVCCRTIYTRFSSRRREPSRHQPENTADDDFVDEEHGPVVDHPIWYIRTLGLQQSIINAITVCRYKKGEGLIEGTECAVCLSEFEEDENLRLLPKCYHAFHLPCIDTWLRSHTNCPICRAPIVSDLATARSESSFVDSNSFGHTHVEILENSAPDSELGNRAEEEVQVEAEDGFRVCETEIPVEEVSGILPRRSVSLDSFSVANINRALATLVSNANSKRVLGGVDDAAASSSSSSSKVASGSDLATTSKGSSSFRLTRYLPGAPGSSMKSSQSYNGKYLLSWYGRNQKKPNAPLRSF 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7521g00004 392 MobiDBLite consensus disorder prediction 322 344 - -
Vium7521g00004 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 220 IPR013083 -
Vium7521g00004 392 MobiDBLite consensus disorder prediction 47 63 - -
Vium7521g00004 392 ProSiteProfiles Zinc finger RING-type profile. 171 213 IPR001841 -
Vium7521g00004 392 FunFam RING-H2 finger protein ATL54 146 219 - -
Vium7521g00004 392 MobiDBLite consensus disorder prediction 47 66 - -
Vium7521g00004 392 Pfam Ring finger domain 170 213 IPR001841 -
Vium7521g00004 392 SUPERFAMILY RING/U-box 165 219 - -
Vium7521g00004 392 MobiDBLite consensus disorder prediction 321 344 - -
Vium7521g00004 392 CDD RING-H2_EL5-like 170 213 - -
Vium7521g00004 392 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 71 220 IPR044675 -
Vium7521g00004 392 SMART ring_2 171 212 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7521g00004 Vium-Chr7521 12311 13809 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7521g00004 78 217 C3H Transcription Factor Family AT1G72220 57.042 6.81e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7521g00004 - - vun:114186636 675.241