Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7521g00003 ATGTCTCAGTCGGAGAGTAAGAAGAAGAAGGAGCGCAGCAGCAGCAAGAAGGAAGAGGACCAAGCAGGCAAAGATGAGGGGTTGATGATAAAACCTCAGAGCTTCACTCCCCCCATCGACACCTCCCAATGGCCCATCCTTCTCAAAAACTACGATCGTCTCAATGTCCGCACCGGCCACTACACCCCCATCCCCTCCGGCTACTCCCCCCTCAAACGCCCCCTACCCGAATACCTCAAATACGGCGTCATCAACCTCGACAAGCCCGCCAACCCTTCCTCCCATGAGGTCGTTGCCTGGATCAAGCGCCTCCTCCGCGTCGAGAAGACCGGCCACTCCGGTACCCTCGACCCCAAGGTCACCGGAAACCTCATCGTCTGTATTGACCGCGCCACTCGCCTCGTCAAGTCCCAGCAGGGTGCCGGCAAGGAATACGTCTGCATCGCCCGCCTTCACTCCGCTGTTCCCGACGTCTCCAAGGTCGGACGCGCCCTAGAGACCCTCACTGGCGCCGTCTTCCAGCGCCCGCCCTTGATCTCTGCCGTCAAACGTCAACTCCGCATCCGGACCATCTACGAAAGTAAGCTCCTTGAGTATGACCCTGATAGGCATTTAGTTGTTTTCTGGATTTCGTGTGAGGCTGGGACCTATGTTAGGACTATGTGTGTCCATTTGGGGTTGCTTCTTGGTGTGGGTGGCCATATGCAAGAGCTTAGGAGGGTTCGGTCTGGGATCATGGGGGAGAAGGATAACATGGTGAGCATGCATGATGTCATGGATGCCCAGTGGGTTTTTGATAATTTTAGGGATGAGAGTTATTTGAGGAGGGCGGTTATGCCCTTGGAAGTTCTTTTGACTAGCTATAAGAGGCTGGTTGTTAAGGACTCTGCTGTCAATGCTATTTGCTATGGTGCTAAGTTGATGATTCCTGGGTTGCTTAGGTTTGAGAATGATATTGATGTTGGGGAGGAGGTTGTGCTTATGACCACCAAGGGGGAGGCTATTGCTCTTGGGATTGCTGAGATGACTACTGCTGTTATGGCCACTTGTGATCATGGGGTTGTGGCCAAGATCAAGAGGGTTGTCATGGATAGGGATACTTATCCAAGGAAATGGGGTTTGGGACCTAGAGCTTCCATGAAGAAGAAGCTTATTTCTGAAGGGAAGCTGGATAAGCATGGGAAGCCCAATGAAAAGACTCCCCAGGAGTGGCTTAGGAATCTTGTTTTGCCCACCGGTGGGGATAGTGTGATTGCTGGTATGGCTGCTGCGCCGGAACCTGAGGATGAGAAGGTCAAGAAGGACGGAGACGGGGAAGGACGGAAGAGGAAGAAGCATGAAAGCACTGATAGCCCAGTTTCGGTCTCTGTTAAGAAGGCGAAAGTGGATGTAGAAGAGGTAAAGGTGAAGCATGTAGCTGATGAGGCTGTGGAGGTTGAAGTTGACAAGAAAGAGAAGAAGAAGAAAAAGAAGAAGGATAAGGATAACAGTGAAGTGGCCTCTTCGGATGAGGAGAAAACAACGGAGAAGAAGAAGAAGCACAAGGATAAGGCTGAAGACGGTTCGCCGGAGTTAGACAAGTCTGAGAAGAAAAAGAAGAAAAAGAAAGACAAAGAAGCTGCTGCTGCAGAAATTAGCAATGGAAAGGAGGATGACGGTAGTGCTGATAAGAGTGAAAAGAAGAAGCATAAGAAAAAGAAAAACAAAGATGCCGAGGACGAATAG 1725 0.5084 MSQSESKKKKERSSSKKEEDQAGKDEGLMIKPQSFTPPIDTSQWPILLKNYDRLNVRTGHYTPIPSGYSPLKRPLPEYLKYGVINLDKPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVSKVGRALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLLLGVGGHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVFDNFRDESYLRRAVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLISEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSVIAGMAAAPEPEDEKVKKDGDGEGRKRKKHESTDSPVSVSVKKAKVDVEEVKVKHVADEAVEVEVDKKEKKKKKKKDKDNSEVASSDEEKTTEKKKKHKDKAEDGSPELDKSEKKKKKKKDKEAAAAEISNGKEDDGSADKSEKKKHKKKKNKDAEDE 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7521g00003 574 MobiDBLite consensus disorder prediction 1 37 - -
Vium7521g00003 574 Pfam PUA domain 289 361 IPR002478 GO:0003723
Vium7521g00003 574 CDD PseudoU_synth_hDyskerin 80 262 - -
Vium7521g00003 574 CDD PUA_Cbf5 287 361 - -
Vium7521g00003 574 MobiDBLite consensus disorder prediction 459 559 - -
Vium7521g00003 574 SMART pua_5 289 363 IPR002478 GO:0003723
Vium7521g00003 574 MobiDBLite consensus disorder prediction 418 574 - -
Vium7521g00003 574 SUPERFAMILY PUA domain-like 288 369 IPR015947 -
Vium7521g00003 574 Pfam DKCLD (NUC011) domain 41 98 IPR012960 -
Vium7521g00003 574 Gene3D PUA domain 41 372 IPR036974 GO:0003723
Vium7521g00003 574 Pfam TruB family pseudouridylate synthase (N terminal domain) 102 218 IPR002501 GO:0006396
Vium7521g00003 574 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 48 373 IPR004802 GO:0006396
Vium7521g00003 574 Gene3D Pseudouridine synthase 74 280 - -
Vium7521g00003 574 MobiDBLite consensus disorder prediction 1 26 - -
Vium7521g00003 574 SUPERFAMILY Pseudouridine synthase 41 286 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vium7521g00003 574 ProSiteProfiles PUA domain profile. 288 363 - -
Vium7521g00003 574 Coils Coil 554 574 - -
Vium7521g00003 574 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 4 517 IPR004802 GO:0006396
Vium7521g00003 574 MobiDBLite consensus disorder prediction 426 452 - -
Vium7521g00003 574 Pfam tRNA pseudouridylate synthase B C-terminal domain 219 285 IPR032819 -
Vium7521g00003 574 NCBIfam uncharacterized domain 2 284 360 IPR004521 GO:0003723
Vium7521g00003 574 FunFam H/ACA ribonucleoprotein complex subunit CBF5 74 280 - -
Vium7521g00003 574 SMART DKCLD_2 40 98 IPR012960 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7521g00003 Vium-Chr7521 9269 11238 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7521g00003 4 461 NAC Transcription Factor Family AT3G57150 83.843 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7521g00003 K11131 - gmx:100806355 854.744