Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium751g00004 ATGGAGTCCTCAATTTCAAGTTTGTACAACAGACATCAGATCACACCATATATAAGTAGTGTTCATGGAAATCACTTACACTCATCATATCATCTTCTCAATCAAAACCACATGCCAAACACCACTCAGCAATTCCCAATCAACAACATCAACTTCAACAAAGATTCCCTGCATGTTTCCCTTCGCAACCTCTCCCAACTCAGCACACGAATGGATTCGCTTCAGAGCTTTGTCTCCCAATCCATTCAATCTCACACTCTCCTCACACACCACCAAATGAACATCGTATCCAACGAGATCCTAACCGCAATTCGCCACGTCATCACCAACGGCGCAGCCTTAGTCGCAGCGTCGGAGGACGTGCTTTCCCTTTCGGAGACTCCCACGTCCGAATACTCTCCCAACCAAACAAACGTGGTGGAGCTGGACGCGATGGAACTCCTGGCGCAGCACCTCCACTTCTGCGAGGTGTGCGGGAAGGGCTTCACGCGCGATGCCAACCTTAGGATGCACATGCGCGCCCACGGGGACGAGTTCAAGACTGCGGACGCGCTCTCGAGCAGGGCGCGTGGCGAGAAGCGTGGGAAAACGACGCGGTTCTCGTGCCCCTTCGAAGGATGCAACCGCAACAAGACGCACAAGAAGTTCAGGCCGTTGAAGTCGGTGTTCTGTCTGAGGAATCACTTCAAGAGGAGCCACTGTCCCAAAACGCTGTCGTGCGAGCGGTGTCGGAAGAAGAGCTTCGCGGTGCTCTCGGACTTGAGGAGTCACATGAAGCAATGTCGGGGAGAGGCCACGTGGAAGTGCTCGTGCGGAACCACGTTTTCGCGGAAGGACAAGTTGTTCGGACACGTGGCGCTGTTCGAGGGGCATTTGCCTATGCTTGAAGAGGAGAAGGAGACCTCGGCGGCGGCGGCGGCGGCGGTGGTGGAAGGGTTGGTGAAGGAAAGTGACGGTGGTTTGGATGGGTTACCTGAAGGGTTCTTCGATGGGTTGGATGAATTTGGGTTTGGTTCCACTGCAAGCACCTCTTCACCGGAAAAAACTTCGCCTTGGGGTTTCCCACAAATAGAAACTCATTTCTAA 1086 0.535 MESSISSLYNRHQITPYISSVHGNHLHSSYHLLNQNHMPNTTQQFPINNINFNKDSLHVSLRNLSQLSTRMDSLQSFVSQSIQSHTLLTHHQMNIVSNEILTAIRHVITNGAALVAASEDVLSLSETPTSEYSPNQTNVVELDAMELLAQHLHFCEVCGKGFTRDANLRMHMRAHGDEFKTADALSSRARGEKRGKTTRFSCPFEGCNRNKTHKKFRPLKSVFCLRNHFKRSHCPKTLSCERCRKKSFAVLSDLRSHMKQCRGEATWKCSCGTTFSRKDKLFGHVALFEGHLPMLEEEKETSAAAAAAVVEGLVKESDGGLDGLPEGFFDGLDEFGFGSTASTSSPEKTSPWGFPQIETHF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium751g00004 361 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 129 303 IPR044300 GO:0010044|GO:0010447
Vium751g00004 361 Pfam Zinc-finger of C2H2 type 154 173 - -
Vium751g00004 361 ProSitePatterns Zinc finger C2H2 type domain signature. 155 175 IPR013087 -
Vium751g00004 361 Gene3D Classic Zinc Finger 192 289 - -
Vium751g00004 361 SMART c2h2final6 238 259 IPR013087 -
Vium751g00004 361 SMART c2h2final6 200 233 IPR013087 -
Vium751g00004 361 SMART c2h2final6 153 175 IPR013087 -
Vium751g00004 361 Gene3D Classic Zinc Finger 153 175 - -
Vium751g00004 361 FunFam B-cell CLL/lymphoma 6, member B 152 175 - -
Vium751g00004 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 180 IPR013087 -
Vium751g00004 361 SUPERFAMILY beta-beta-alpha zinc fingers 151 178 IPR036236 -
Vium751g00004 361 MobiDBLite consensus disorder prediction 340 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium751g00004 Vium-Chr751 28082 29290 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium751g00004 134 351 C2H2 Transcription Factor Family AT1G34370 50.000 8.34e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium751g00004 zf-met 0.0016 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium751g00004 - - vum:124823301 713.375