Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium751g00002 ATGATGCCAGTAGAAATGGGCTTCTTATTTGTGTTATTGATATTGGGTTGCTTATGTTCTTTTGTGTTTCCTGACACGCAAGGAGATGCACTATATGCATTGAAGGCGTCACTGAATGCTTCAGCTCACCAGCTTACTGACTGGAATCAAAATCAAGTGAATCCTTGTACTTGGTCACGTGTTTACTGTGACTCAAACAACAATGTCATCCAAGTATCACTAGCATATATGGGATTCACAGGATACTTGAACCCAAGAATAGGAGTACTAAAATATGCTACAGCTCTTTCTTTGCAAGGGAATGGCATCACTGGCAGCATACCGAAAGAGATAGGAAACATGACAAGCTTGTGCAGGTTGGATTTGGAAAACAATAAATTAACTGGAGAAATACCTTCTTCCCTTGGTAATCTTAAAAAGCTTCAGTTCTTAACATTGAGTCAAAACAATCTTAGTGGGACTATTCCTGAATCACTTGCTACTCTTCCAATCTTGATCAATGTTATGCTAGATTCAAATAATCTGAATGGCAAAATCCCAGAGCGGTTATTTGAGGTTTCTAAATACAATTTCACTGGAAATAATTTGGATTGTGGTCATCGACTTTGCGAATCTGATAATGCAGACCAAGGTTCATCACATAAATCAAAAACTGGCCTCGTTGTTGGAATTGTTACAGCGCTAGTTGTTATCCTTTTCCTTGGTGGTCTGCTGTTCTTTTGGTGCAAGGGTAGAAACAAGGGTTACAGGCGTGAAGTTTTTGTAGATGTTCCAGGGGAAGTTGATCGGCGAATTGCATTTGGTCAGCTAAAACGATTTGCATGGAGAGAATTACAGATAGCTACAGACAACTTCAGTGAGAAGAATGTTTTAGGACAGGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTTGCTGATAACACAAAAGTTGCTGTCAAAAGGTTAACTGATTATGAAAGTCCTGGGGGAGATGCAGCTTTCCAGCGTGAGGTTGAGATGATAAGTGTAGCTGTGCATAGGAACCTGTTACGGTTGATTGGGTTTTGTACTACCCCGACTGAGCGCCTCTTGGTTTATCCCTTTATGCAGAACTTAAGTGTTGCCTATCGTCTTCGAGAACTCAAACCTGGTGAACCTGTTCTGGACTGGCCTACTAGAAAACGAGTGGCCCTGGGAACAGCTCGAGGCTTAGAATATCTTCATGAGCATTGCAATCCTAAGATTATTCATCGGGATGTGAAGGCAGCTAATGTATTACTAGATGAAGATTTTGAAGCTGTTGTTGGTGATTTTGGCTTGGCAAAGTTAGTCGATGTTCGGAAAACCAACGTGACAACTGAAATTCGTGGGACGATGGGCCACATAGCTCCAGAATATTTGTCCACTGGAAAGTCTTCGGGAAGGACTGATGTTTTTGGTTATGGGATTATGCTCTTGGAGCTCGTTACAGGTCAACGAGCAATTGACTTTTCAAGATTAGAAGAGGAAGATGATGTGCTGCTACTTGACCATGTTAAAAAATTAGAACGGGAAAAACGACTAGACGCCATTGTTGATCGCAACCTAAATAAAAATTACAACCTACTAGAGGTAGAAATGATGATACAGGTTGCGTTACTCTGTACGCAAGCAACACCAGAGGACCGTCCACCAATGTCTGAGGTGGTAAGAATGCTTGAAGGAGAAGGGTTGGCTGAAAGGTGGGAGGAATGGCAGCACGTGGAGGTCAATCGGAGACAAGAATACGAGAGATTACAAAGAAGATTTGATTGGGGAGAAGATTCCGTCTATAATCAAGATGCCATTGAATTGTCTGGTGGGAGATGA 1827 0.4171 MMPVEMGFLFVLLILGCLCSFVFPDTQGDALYALKASLNASAHQLTDWNQNQVNPCTWSRVYCDSNNNVIQVSLAYMGFTGYLNPRIGVLKYATALSLQGNGITGSIPKEIGNMTSLCRLDLENNKLTGEIPSSLGNLKKLQFLTLSQNNLSGTIPESLATLPILINVMLDSNNLNGKIPERLFEVSKYNFTGNNLDCGHRLCESDNADQGSSHKSKTGLVVGIVTALVVILFLGGLLFFWCKGRNKGYRREVFVDVPGEVDRRIAFGQLKRFAWRELQIATDNFSEKNVLGQGGFGKVYKGVLADNTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGEPVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTEIRGTMGHIAPEYLSTGKSSGRTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLNKNYNLLEVEMMIQVALLCTQATPEDRPPMSEVVRMLEGEGLAERWEEWQHVEVNRRQEYERLQRRFDWGEDSVYNQDAIELSGGR 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium751g00002 608 FunFam Putative LRR receptor-like serine/threonine-protein kinase 24 207 - -
Vium751g00002 608 Gene3D Ribonuclease Inhibitor 24 206 IPR032675 -
Vium751g00002 608 SUPERFAMILY Protein kinase-like (PK-like) 265 560 IPR011009 -
Vium751g00002 608 Gene3D Transferase(Phosphotransferase) domain 1 362 579 - -
Vium751g00002 608 ProSitePatterns Protein kinases ATP-binding region signature. 291 313 IPR017441 GO:0005524
Vium751g00002 608 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 570 - -
Vium751g00002 608 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Vium751g00002 608 SUPERFAMILY L domain-like 26 196 - -
Vium751g00002 608 Pfam Leucine rich repeat 94 151 IPR001611 GO:0005515
Vium751g00002 608 SMART serkin_6 285 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium751g00002 608 FunFam Somatic embryogenesis receptor kinase 1 254 361 - -
Vium751g00002 608 Gene3D Phosphorylase Kinase; domain 1 254 361 - -
Vium751g00002 608 Pfam Protein kinase domain 286 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium751g00002 608 ProSiteProfiles Protein kinase domain profile. 285 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium751g00002 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672|GO:0006468
Vium751g00002 608 FunFam Somatic embryogenesis receptor-like kinase 1 362 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium751g00002 Vium-Chr751 170 9164 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium751g00002 5 608 Receptor kinase-like Gene Family AT5G10290 77.430 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vium751g00002 Pkinase 7.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium751g00002 - - gmx:100793416 1123.23